Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30751.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    24   1.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.6  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   4.7  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 154 NRQSISFELKREPKQFKCEYKRK*VPMHSIRHYNGKLLIYSISQAKIINVWVP 312
           +R  +  E  +EPK       +     ++  +YN K L Y+I+  + I V VP
Sbjct: 289 SRDRMERERSKEPKIISSLSNKTIHNNNNYNNYNNKKLYYNINYIEQIPVPVP 341


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 308 CPPNILALK*PPWIGVENTVCTAVLRTV 391
           C P + A     W+G  N+    V+ TV
Sbjct: 652 CQPGVTAFIVTSWLGYMNSFVNPVIYTV 679


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 499 YHTTGTRNPGTXVTAS 546
           Y   GT+NPGT  T +
Sbjct: 90  YCPKGTKNPGTLATVN 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,834
Number of Sequences: 438
Number of extensions: 2911
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)