Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30750.Seq
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 105 4e-24
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 103 2e-23
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 4.1
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 26 5.4
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 26 5.4
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 9.4
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.4
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 105 bits (253), Expect = 4e-24
Identities = 68/197 (34%), Positives = 95/197 (48%)
Frame = +2
Query: 50 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 229
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 230 RAVVAIENPLMCSSISIKGPFXSSVAVLKVCPXXXVPTAYXGXFXTRCFY*PDPSCIX*T 409
R + IENP +S + AVLK TA G F F
Sbjct: 65 RVIATIENPADVCVVSTR--TYGHRAVLKFAAHTGA-TAIAGRFTPGNFTNYITRTYREP 121
Query: 410 XSLDCIGPCTRPSTHY*SFICQHXGNXLXQXDSXXDXWTLXSHATPSXPTSIGLMWWLLA 589
+ P + L DS + + SIGL+W+LLA
Sbjct: 122 RLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLA 181
Query: 590 REVLRLRGVLPRDQRWD 640
REVLR+RG L R WD
Sbjct: 182 REVLRVRGTLSRSAPWD 198
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/45 (48%), Positives = 26/45 (57%)
Frame = +3
Query: 354 GXXTXGAFTNQIQAAFXEXXLLIVLDPAQDHQPITEASYVNXXVI 488
G T G FTN I + E L++V DP D Q I EAS+VN VI
Sbjct: 103 GRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVI 147
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 103 bits (247), Expect = 2e-23
Identities = 70/193 (36%), Positives = 94/193 (48%)
Frame = +2
Query: 62 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 241
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 242 AIENPLMCSSISIKGPFXSSVAVLKVCPXXXVPTAYXGXFXTRCFY*PDPSCIX*TXSLD 421
IENP IS + P+ AVLK TA G F F +
Sbjct: 70 TIENPADVCVISSR-PYGHR-AVLKFAAHTGA-TAIAGRFTPGNFTNYITRTYREPRLII 126
Query: 422 CIGPCTRPSTHY*SFICQHXGNXLXQXDSXXDXWTLXSHATPSXPTSIGLMWWLLAREVL 601
P + L DS + + SIGL W+LLAREVL
Sbjct: 127 VTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVL 186
Query: 602 RLRGVLPRDQRWD 640
RLRG + R W+
Sbjct: 187 RLRGNISRTTAWE 199
Score = 45.2 bits (102), Expect = 8e-06
Identities = 23/45 (51%), Positives = 26/45 (57%)
Frame = +3
Query: 354 GXXTXGAFTNQIQAAFXEXXLLIVLDPAQDHQPITEASYVNXXVI 488
G T G FTN I + E L+IV DP D Q I EAS+VN VI
Sbjct: 104 GRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVI 148
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 563 IGLMWWLLAREVLRLRGVLPRDQRWD 640
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -3
Query: 268 RTHQRVLDGYDSTSSQ--NKFFPGTTQVDHMGTISTSFVDIGLHLEVN 131
RT + DSTS NK+ G V + S S DIGLH E +
Sbjct: 345 RTSAEMFTTVDSTSRAIVNKYSLGNN-VSTVNPFSKSLYDIGLHAETD 391
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -3
Query: 265 THQRVLDGYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGLHLEVN 131
T Q ++D D+ + + T V+HMG+ +D G++ N
Sbjct: 118 TEQDLIDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFN 162
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 9.4
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -3
Query: 193 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 44
VD+ G I S I LE+N K GG F G F + E V + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 153 MSTNDVLMVPM*STCVVPGKNLFWLLVL 236
M+ N V + + T PG N FW L++
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLII 947
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,431
Number of Sequences: 5004
Number of extensions: 41582
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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