Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30750.Seq
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 103 9e-23
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 100 9e-22
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 29 2.4
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 4.2
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 5.6
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 7.4
05_02_0051 - 6110320-6110375,6110554-6110696,6111011-6111124,611... 27 9.7
02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532 27 9.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 103 bits (248), Expect = 9e-23
Identities = 74/203 (36%), Positives = 96/203 (47%)
Frame = +2
Query: 32 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 211
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 212 KLVLAARAVVAIENPLMCSSISIKGPFXSSVAVLKVCPXXXVPTAYXGXFXTRCFY*PDP 391
KL LAAR +VAIENP S + P+ AVLK A G F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSAR-PYGQR-AVLKFAQYTGA-HAIAGRHTPGTFTNQLQ 117
Query: 392 SCIX*TXSLDCIGPCTRPSTHY*SFICQHXGNXLXQXDSXXDXWTLXSHATPSXPTSIGL 571
+ L P T S + DS + A SIG
Sbjct: 118 TSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGC 177
Query: 572 MWWLLAREVLRLRGVLPRDQRWD 640
++WLLAR VL++RG + +WD
Sbjct: 178 LFWLLARMVLQMRGTILPGHKWD 200
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/45 (51%), Positives = 28/45 (62%)
Frame = +3
Query: 354 GXXTXGAFTNQIQAAFXEXXLLIVLDPAQDHQPITEASYVNXXVI 488
G T G FTNQ+Q +F E LLI+ DP DHQPI E++ N I
Sbjct: 105 GRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTI 149
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 100 bits (240), Expect = 9e-22
Identities = 71/192 (36%), Positives = 91/192 (47%)
Frame = +2
Query: 65 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 244
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 245 IENPLMCSSISIKGPFXSSVAVLKVCPXXXVPTAYXGXFXTRCFY*PDPSCIX*TXSLDC 424
IENP S + P+ AVLK A G F + L
Sbjct: 72 IENPQDIIVQSAR-PYGQR-AVLKFAQYTGA-HAIAGRHTPGTFTNQLQTSFSEPRLLIL 128
Query: 425 IGPCTRPSTHY*SFICQHXGNXLXQXDSXXDXWTLXSHATPSXPTSIGLMWWLLAREVLR 604
P T S + DS + A SIG ++WLLAR VL+
Sbjct: 129 TDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQ 188
Query: 605 LRGVLPRDQRWD 640
+RG + +WD
Sbjct: 189 MRGTILPGHKWD 200
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/45 (51%), Positives = 28/45 (62%)
Frame = +3
Query: 354 GXXTXGAFTNQIQAAFXEXXLLIVLDPAQDHQPITEASYVNXXVI 488
G T G FTNQ+Q +F E LLI+ DP DHQPI E++ N I
Sbjct: 105 GRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTI 149
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 286 ALDGDXRTHQRVLDGYDSTSSQNKFFPGTTQV 191
A+DG R H+R+ DG D S Q + G T++
Sbjct: 177 AVDGLLRVHKRITDGLDGESDQPQRAAGPTRL 208
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 132 TFSAPRWVVAASILVTSSSLRASTSNP 52
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 139 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 246
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 175 WYPCDQLASYLGKTCSGCSCCRSHREP 255
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
>05_02_0051 -
6110320-6110375,6110554-6110696,6111011-6111124,
6111586-6111685,6111768-6111850,6112003-6112087,
6112773-6112828,6113569-6114056
Length = 374
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 129 FSAPRWVVAASILVTSSSLRASTSNPPDIVALI*VTTK 16
FS +VAA+ L + S RA+T PP + A+ T K
Sbjct: 58 FSVACLLVAAASLAFAFSARAATLQPPPLAAVAEATAK 95
>02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532
Length = 119
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -3
Query: 268 RTHQRVLDGY---DSTSSQNKFFPGTTQVDHMGTISTSFVDIGL 146
R QRV +G + ++++ + P TT +GTIS+ VD+GL
Sbjct: 65 RARQRVGEGVRLDNGLANRDWYLPSTTHA--VGTISSGVVDVGL 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,412,847
Number of Sequences: 37544
Number of extensions: 313066
Number of successful extensions: 774
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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