Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30750.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               124   6e-29
SB_11960| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  28   7.5  
SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)                    27   9.9  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  124 bits (299), Expect = 6e-29
 Identities = 83/201 (41%), Positives = 106/201 (52%), Gaps = 2/201 (0%)
 Frame = +2

Query: 44  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 223
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 224 AARAVVAIENPLMCSSISIKGPFXSSVAVLKVCPXXXVPTAYXGXFXTRCFY*PDPSCIX 403
           AAR +V IENP     IS + P+    A+LK        T   G F    F     +   
Sbjct: 61  AARIIVTIENPADVCVISAR-PYGQR-AILKYASHTGA-TPIAGRFTPGTFTNQIQAAFR 117

Query: 404 *TXSLDCIGPCT--RPSTHY*SFICQHXGNXLXQXDSXXDXWTLXSHATPSXPTSIGLMW 577
               L    P    +P T   S++           DS      +          SIGLM+
Sbjct: 118 EPRLLIVCDPRIDHQPVTEA-SYV-NIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMF 175

Query: 578 WLLAREVLRLRGVLPRDQRWD 640
           WLLAREVLR+RG + R   W+
Sbjct: 176 WLLAREVLRMRGSISRALPWE 196



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 33/48 (68%), Positives = 34/48 (70%)
 Frame = +3

Query: 345 PXXGXXTXGAFTNQIQAAFXEXXLLIVLDPAQDHQPITEASYVNXXVI 488
           P  G  T G FTNQIQAAF E  LLIV DP  DHQP+TEASYVN  VI
Sbjct: 98  PIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPVTEASYVNIPVI 145


>SB_11960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -2

Query: 278 WRXTNTSAGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVCRHRSPSGS*HFLPQDGWLQQ 99
           W   N  AG+R     +QP   +P YDA       QH +    SPS + H L  D     
Sbjct: 239 WANVNDPAGNRNPNNPDQPSFAWPAYDAG-----SQHYLRLKPSPSSAQH-LRAD---HM 289

Query: 98  AFW 90
           AFW
Sbjct: 290 AFW 292


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 566 GLMWWLLAREVLRLRGVLP 622
           G +WW+L  E LR + VLP
Sbjct: 49  GSVWWVLTSESLRAKAVLP 67


>SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)
          Length = 139

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 154 CLQTTC*WYPCD-QLASYLGKTCSGCSC 234
           C+Q  C    CD  + SY G+TC G +C
Sbjct: 87  CVQRCCDVLHCDLAMMSYGGRTCYGVAC 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,429,138
Number of Sequences: 59808
Number of extensions: 343177
Number of successful extensions: 899
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)