Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30750.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   116   1e-26
Z81071-5|CAB03011.1|  200|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF067950-3|AAG24158.2|  371|Caenorhabditis elegans Serpentine re...    28   5.0  
AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cel...    28   6.6  
AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.     28   6.6  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  116 bits (280), Expect = 1e-26
 Identities = 78/198 (39%), Positives = 104/198 (52%), Gaps = 4/198 (2%)
 Frame = +2

Query: 44  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 223
           MSGG    AL EEDV K+LA   HLG+ N+NFQM+ YVYKRR DG ++IN+++TWEKL+L
Sbjct: 1   MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60

Query: 224 AARAVVAIENPLMCSSISIKGPFXSSVAVLKVCPXXXVPTAYXGXFXTRCFY*PDPSCIX 403
           AARA+ A+ENP     +S + P+ +  A+LK        TA  G F   C      + I 
Sbjct: 61  AARAIAAVENPADVVVVSAR-PY-AQRALLKFAAHTGA-TAIFGRFSPGCL----TNQIQ 113

Query: 404 *TXSLDCIGPCTRPS-THY*SFICQHXGNXLXQXDSXXDXWTLXSHATP---SXPTSIGL 571
            T     +   + P   H       + G  +    +      L     P       SIGL
Sbjct: 114 KTFKEPRLLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGL 173

Query: 572 MWWLLAREVLRLRGVLPR 625
           MWW+LARE+L LRG + R
Sbjct: 174 MWWMLAREILILRGKISR 191



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 24/45 (53%), Positives = 28/45 (62%)
 Frame = +3

Query: 354 GXXTXGAFTNQIQAAFXEXXLLIVLDPAQDHQPITEASYVNXXVI 488
           G  + G  TNQIQ  F E  LL++ DP  DHQ +TEASYV   VI
Sbjct: 101 GRFSPGCLTNQIQKTFKEPRLLVISDPRIDHQAVTEASYVGVPVI 145


>Z81071-5|CAB03011.1|  200|Caenorhabditis elegans Hypothetical
           protein F28F8.5 protein.
          Length = 200

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 313 QYSNAXPEGALDGDXRTHQRVL--DGYDSTSSQNK 215
           +YSN+ P+GA DG     +R +  DG  ST+  ++
Sbjct: 42  EYSNSVPQGAADGSIENDERRMRNDGAGSTNEDDE 76


>AF067950-3|AAG24158.2|  371|Caenorhabditis elegans Serpentine
           receptor, class w protein137 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +2

Query: 137 FQMETYVYKRRADGTHVIN--LRR--TWEKLVLAARAVVAIENPLMCSSISIKGPFXSSV 304
           FQ ETY +        V+    RR  TW   ++A    + I NPL  S   + GP  S  
Sbjct: 102 FQSETYTFVIIETSFQVLQDYSRRCSTWLCFLIALIRTLVIRNPLNQSYQKLAGPALSGF 161

Query: 305 AVLKV 319
           A+L +
Sbjct: 162 AILGI 166


>AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cell
           migration protein 30 protein.
          Length = 787

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +2

Query: 14  RLVVTQISATMSGGLDVLALNEED-VTKMLAATTHLGAENVNFQMETYVYKRRADGTHVI 190
           R+V T+          +L ++  D  T  LAA   L  ++++  +E Y+ KR    TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203

Query: 191 NLRRTWEKLVLAARAVVAIENPL 259
               T   +V   +  +A+   L
Sbjct: 204 EDSATILNIVDEMKKTLAVVEEL 226


>AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.
          Length = 787

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +2

Query: 14  RLVVTQISATMSGGLDVLALNEED-VTKMLAATTHLGAENVNFQMETYVYKRRADGTHVI 190
           R+V T+          +L ++  D  T  LAA   L  ++++  +E Y+ KR    TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203

Query: 191 NLRRTWEKLVLAARAVVAIENPL 259
               T   +V   +  +A+   L
Sbjct: 204 EDSATILNIVDEMKKTLAVVEEL 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,375,586
Number of Sequences: 27780
Number of extensions: 256475
Number of successful extensions: 565
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)