Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30750.Seq
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 97 1e-20
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 97 1e-20
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 96 2e-20
At2g22340.1 68415.m02651 hypothetical protein 33 0.22
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 27 8.1
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 96.7 bits (230), Expect = 1e-20
Identities = 67/188 (35%), Positives = 89/188 (47%)
Frame = +2
Query: 77 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 256
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 257 LMCSSISIKGPFXSSVAVLKVCPXXXVPTAYXGXFXTRCFY*PDPSCIX*TXSLDCIGPC 436
S + P+ AVLK V A G F + L P
Sbjct: 77 KDIIVQSAR-PYGQR-AVLKFAQYTGV-NAIAGRHTPGTFTNQMQTSFSEPRLLILTDPR 133
Query: 437 TRPSTHY*SFICQHXGNXLXQXDSXXDXWTLXSHATPSXPTSIGLMWWLLAREVLRLRGV 616
T + DS + A SIG ++WLLAR VL++RG
Sbjct: 134 TDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 193
Query: 617 LPRDQRWD 640
+ Q+WD
Sbjct: 194 ILAAQKWD 201
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/45 (51%), Positives = 27/45 (60%)
Frame = +3
Query: 354 GXXTXGAFTNQIQAAFXEXXLLIVLDPAQDHQPITEASYVNXXVI 488
G T G FTNQ+Q +F E LLI+ DP DHQPI E + N I
Sbjct: 106 GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTI 150
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 96.7 bits (230), Expect = 1e-20
Identities = 67/188 (35%), Positives = 89/188 (47%)
Frame = +2
Query: 77 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 256
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 257 LMCSSISIKGPFXSSVAVLKVCPXXXVPTAYXGXFXTRCFY*PDPSCIX*TXSLDCIGPC 436
S + P+ AVLK V A G F + L P
Sbjct: 77 KDIIVQSAR-PYGQR-AVLKFAQYTGV-NAIAGRHTPGTFTNQMQTSFSEPRLLILTDPR 133
Query: 437 TRPSTHY*SFICQHXGNXLXQXDSXXDXWTLXSHATPSXPTSIGLMWWLLAREVLRLRGV 616
T + DS + A SIG ++WLLAR VL++RG
Sbjct: 134 TDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 193
Query: 617 LPRDQRWD 640
+ Q+WD
Sbjct: 194 ILAAQKWD 201
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/45 (51%), Positives = 27/45 (60%)
Frame = +3
Query: 354 GXXTXGAFTNQIQAAFXEXXLLIVLDPAQDHQPITEASYVNXXVI 488
G T G FTNQ+Q +F E LLI+ DP DHQPI E + N I
Sbjct: 106 GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTI 150
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 95.9 bits (228), Expect = 2e-20
Identities = 71/196 (36%), Positives = 94/196 (47%), Gaps = 4/196 (2%)
Frame = +2
Query: 65 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 244
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 245 IENPLMCSSISIKGPFXSSVAVLKVCPXXXVPTAYXGXFXTRCFY*PDPSCIX*TXSLDC 424
IENP S + P+ AVLK A G F + + + S
Sbjct: 72 IENPQDIIVQSAR-PYGQR-AVLKFAQYTGA-NAIAGRHTPGTF----TNQMQTSFSEPR 124
Query: 425 IGPCTRPSTHY*SFICQHXGN----XLXQXDSXXDXWTLXSHATPSXPTSIGLMWWLLAR 592
+ T P T + GN DS + A SIG ++WLLAR
Sbjct: 125 LLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLAR 184
Query: 593 EVLRLRGVLPRDQRWD 640
VL++RG + Q+WD
Sbjct: 185 MVLQMRGTIAAGQKWD 200
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/45 (51%), Positives = 28/45 (62%)
Frame = +3
Query: 354 GXXTXGAFTNQIQAAFXEXXLLIVLDPAQDHQPITEASYVNXXVI 488
G T G FTNQ+Q +F E LLI+ DP DHQPI E + N +I
Sbjct: 105 GRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPII 149
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 115 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 234
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 286 ALDGDXRTHQRVLDGYDSTSSQ 221
++DG R H R++DG D +SQ
Sbjct: 249 SMDGLLRVHMRIVDGLDGEASQ 270
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,659,014
Number of Sequences: 28952
Number of extensions: 233662
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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