Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30749.Seq
         (547 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S...   128   2e-29
CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.               128   2e-29
BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23 p...   128   2e-29
AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23 p...    79   1e-14
Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal p...    35   0.16 
CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.               35   0.16 
BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal...    35   0.16 
BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal...    35   0.16 
BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal...    35   0.16 
AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12 p...    35   0.16 

>D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S28
           homologue protein.
          Length = 143

 Score =  128 bits (308), Expect = 2e-29
 Identities = 57/66 (86%), Positives = 63/66 (95%)
 Frame = +3

Query: 51  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 231 IKNGKK 248
           IKNGKK
Sbjct: 75  IKNGKK 80



 Score = 79.8 bits (188), Expect = 6e-15
 Identities = 38/42 (90%), Positives = 39/42 (92%)
 Frame = +1

Query: 310 VAGFGRKGHAVGDIPGVRFKVVQVANVSLLALYKESKERPGS 435
           VAGFGRKGHAVGDIPGVRFKVV+VANVSLLALYK  KERP S
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143



 Score = 36.3 bits (80), Expect = 0.070
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +2

Query: 242 KESDPFVPRDGCLNHIEENDE 304
           K+   FVP DGCLN IEENDE
Sbjct: 79  KKITAFVPNDGCLNFIEENDE 99


>CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.
          Length = 143

 Score =  128 bits (308), Expect = 2e-29
 Identities = 57/66 (86%), Positives = 63/66 (95%)
 Frame = +3

Query: 51  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 231 IKNGKK 248
           IKNGKK
Sbjct: 75  IKNGKK 80



 Score = 79.8 bits (188), Expect = 6e-15
 Identities = 38/42 (90%), Positives = 39/42 (92%)
 Frame = +1

Query: 310 VAGFGRKGHAVGDIPGVRFKVVQVANVSLLALYKESKERPGS 435
           VAGFGRKGHAVGDIPGVRFKVV+VANVSLLALYK  KERP S
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143



 Score = 36.3 bits (80), Expect = 0.070
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +2

Query: 242 KESDPFVPRDGCLNHIEENDE 304
           K+   FVP DGCLN IEENDE
Sbjct: 79  KKITAFVPNDGCLNFIEENDE 99


>BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23
           protein.
          Length = 143

 Score =  128 bits (308), Expect = 2e-29
 Identities = 57/66 (86%), Positives = 63/66 (95%)
 Frame = +3

Query: 51  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 231 IKNGKK 248
           IKNGKK
Sbjct: 75  IKNGKK 80



 Score = 79.8 bits (188), Expect = 6e-15
 Identities = 38/42 (90%), Positives = 39/42 (92%)
 Frame = +1

Query: 310 VAGFGRKGHAVGDIPGVRFKVVQVANVSLLALYKESKERPGS 435
           VAGFGRKGHAVGDIPGVRFKVV+VANVSLLALYK  KERP S
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143



 Score = 36.3 bits (80), Expect = 0.070
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +2

Query: 242 KESDPFVPRDGCLNHIEENDE 304
           K+   FVP DGCLN IEENDE
Sbjct: 79  KKITAFVPNDGCLNFIEENDE 99


>AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23
           protein.
          Length = 59

 Score = 79.0 bits (186), Expect = 1e-14
 Identities = 37/40 (92%), Positives = 38/40 (95%)
 Frame = +1

Query: 310 VAGFGRKGHAVGDIPGVRFKVVQVANVSLLALYKESKERP 429
           VAGFGRKGHAVGDIPGVRFKVV+VANVSLLALYK  KERP
Sbjct: 19  VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERP 58



 Score = 35.5 bits (78), Expect = 0.12
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +2

Query: 257 FVPRDGCLNHIEENDE 304
           FVP DGCLN IEENDE
Sbjct: 1   FVPNDGCLNFIEENDE 16


>Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 precursor protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.16
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 117 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.16
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 117 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.16
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 117 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.16
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 117 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.16
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 117 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12
           protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.16
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 117 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 230
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,175,509
Number of Sequences: 237096
Number of extensions: 1911002
Number of successful extensions: 5928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5928
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)