Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30749.Seq
(547 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 112 2e-25
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 103 8e-23
At1g59560.1 68414.m06698 expressed protein contains similarity t... 30 0.88
At4g32890.1 68417.m04680 zinc finger (GATA type) family protein ... 29 2.0
At1g32960.1 68414.m04059 subtilase family protein contains simil... 28 4.7
At1g32940.1 68414.m04057 subtilase family protein contains simil... 28 4.7
At1g28470.1 68414.m03501 no apical meristem (NAM) family protein... 28 4.7
At4g23300.1 68417.m03358 protein kinase family protein contains ... 27 6.2
At4g23210.2 68417.m03348 protein kinase family protein contains ... 27 6.2
At4g23210.1 68417.m03347 protein kinase family protein contains ... 27 6.2
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 112 bits (269), Expect = 2e-25
Identities = 49/64 (76%), Positives = 57/64 (89%)
Frame = +3
Query: 57 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 236
R QRWADK++KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17 RINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75
Query: 237 NGKK 248
NGKK
Sbjct: 76 NGKK 79
Score = 75.8 bits (178), Expect = 2e-14
Identities = 34/42 (80%), Positives = 39/42 (92%)
Frame = +1
Query: 310 VAGFGRKGHAVGDIPGVRFKVVQVANVSLLALYKESKERPGS 435
+AGFGRKGHAVGDIPGVRFKVV+V+ VSLLAL+KE KE+P S
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDE 304
K+ FVP DGCLN+IEENDE
Sbjct: 78 KKIAAFVPNDGCLNYIEENDE 98
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 103 bits (247), Expect = 8e-23
Identities = 47/64 (73%), Positives = 54/64 (84%)
Frame = +3
Query: 57 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 236
R QRWADK +KK++ G +WK PF +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17 RITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75
Query: 237 NGKK 248
NGKK
Sbjct: 76 NGKK 79
Score = 75.8 bits (178), Expect = 2e-14
Identities = 34/42 (80%), Positives = 39/42 (92%)
Frame = +1
Query: 310 VAGFGRKGHAVGDIPGVRFKVVQVANVSLLALYKESKERPGS 435
+AGFGRKGHAVGDIPGVRFKVV+V+ VSLLAL+KE KE+P S
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 242 KESDPFVPRDGCLNHIEENDE 304
K+ FVP DGCLN+IEENDE
Sbjct: 78 KKIAAFVPNDGCLNYIEENDE 98
>At1g59560.1 68414.m06698 expressed protein contains similarity to
apoptosis inhibitors
Length = 338
Score = 30.3 bits (65), Expect = 0.88
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 478 TRFPTAGHLSQCTPMIL-VAPCSLCRER 398
T F GH+ CTP L + C LCRER
Sbjct: 301 TAFVECGHMCCCTPCSLQLRTCPLCRER 328
>At4g32890.1 68417.m04680 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
gb:Y13650
Length = 308
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 518 SYGQDFTFHELVNHALPDSRSLI 450
S G+DF H NH PD R LI
Sbjct: 286 SNGEDFLMHNNTNHVAPDFRHLI 308
>At1g32960.1 68414.m04059 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
Length = 777
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 72 WADKEFKKAHMGTKWKANPFGGASHAKG 155
W+ F+ A + T W+ +PFG A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602
>At1g32940.1 68414.m04057 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 774
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 72 WADKEFKKAHMGTKWKANPFGGASHAKG 155
W+ F+ A + T W+ +PFG A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599
>At1g28470.1 68414.m03501 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAM protein GI:6066594 from [Petunia hybrida]
Length = 314
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = -3
Query: 326 RPNPATSIRRF----LRCGLGNRHGGRMGHFLSVLNELYTDAFADGRVGLLSFYTD 171
+P ++ RF ++ G G HGG+ V+ EL DG LSF D
Sbjct: 248 KPKNLVNLNRFSYENIQAGFGYEHGGKSEETTQVIRELVVRE-GDGSCSFLSFTCD 302
>At4g23300.1 68417.m03358 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 660
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 496 FMNL*TTRFPTAGHLSQCTPMILVAPCSLCRERG 395
F NL T+F L QCTP I C+ C +RG
Sbjct: 189 FANL--TKFQNIYALMQCTPDISSDECNNCLQRG 220
>At4g23210.2 68417.m03348 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 524
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 496 FMNL*TTRFPTAGHLSQCTPMILVAPCSLCRERG 395
F NL T+F L QCTP I C+ C +RG
Sbjct: 189 FANL--TKFQNIYALMQCTPDISSDECNNCLQRG 220
>At4g23210.1 68417.m03347 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 610
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 496 FMNL*TTRFPTAGHLSQCTPMILVAPCSLCRERG 395
F NL T+F L QCTP I C+ C +RG
Sbjct: 189 FANL--TKFQNIYALMQCTPDISSDECNNCLQRG 220
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,829,069
Number of Sequences: 28952
Number of extensions: 269399
Number of successful extensions: 559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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