Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30748.Seq
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    25   4.8  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   6.3  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    25   6.3  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    25   6.3  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    25   6.3  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   6.3  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   8.4  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    25   8.4  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.4  

>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 415 GAHRLWGPQILQSEITSSNPTK 480
           GA+ +WGP+I+   + S  P +
Sbjct: 31  GANLVWGPEIVDKALLSGTPVE 52


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 304 LHVTMFYGPYLCCTTAQWASHWFAYPCYVAATICVTAGAHRLW 432
           L +   YG +   T  Q  +  FA   Y  + + +TAG HRLW
Sbjct: 73  LPMIAIYGVFT--TPLQTKTLIFAIIYYAYSGLGITAGYHRLW 113


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 209 LFRLQSVHYTSDFVPFSHYVNSKNKRATLYFTRVEYC 99
           LF L+S     D    S +    ++RAT++FT  E C
Sbjct: 259 LFSLRSSSNNPDSDQESQFSRLPDERATMFFTIYELC 295


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 161 KMAQNQTYNGLIVTEIEDSSLEHDSVK 241
           +M   +T NG+ + + EDS+++ D++K
Sbjct: 67  EMTHKKTKNGVPLEQREDSTIDMDTIK 93


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
 Frame = +1

Query: 289 FIHIYLHVT--MFYGPYLCCTTAQWASHWFAYPCYVAATI---CVTAGAHRLWGPQILQS 453
           FI +YLH+   ++YG Y    T  W      +   +       C+ A     WG  ++ +
Sbjct: 90  FIFLYLHIGRGLYYGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVITN 149

Query: 454 EITS 465
            +++
Sbjct: 150 LLSA 153


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 256 PREYEIVYKNIFIHIYLHVTMF 321
           PRE+    ++I  H+Y+H T+F
Sbjct: 211 PREWYTFVQSISKHLYIHNTLF 232


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 84  GPEMGAVLHASKVKCSALVLGVYIMRK 164
           GP +GA+L+AS      L++GV  +++
Sbjct: 112 GPTLGALLNASFGNAIELIVGVLALKR 138


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -1

Query: 179 SDFVPFSHYVNSKNKRATLYFTRVEYCSHLWAGAPKYQLLPF 54
           +  +P S Y+  KN+R   +      C+       K +L+PF
Sbjct: 232 NSIIPGSPYIEVKNERIVSFLVLASLCTVDPQDPSKVKLIPF 273


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 294 YEYIFIDDFIFSRXTTEGLTLSCSRLESSISVTISPLYV*FCAI 163
           Y +IF     F+R  +E ++ S  +L S     +  L+  +C+I
Sbjct: 213 YTHIFDSLLTFTRHDSEDVSTSVEKLTSKKISELEKLFADYCSI 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,228
Number of Sequences: 5004
Number of extensions: 42529
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)