Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30748.Seq
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0241 - 1866625-1868082,1868892-1869080                           29   2.7  
09_06_0319 - 22293869-22293906,22294539-22295808                       28   3.6  
08_02_0230 - 14572854-14574632                                         28   4.8  
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253...    27   6.3  

>03_01_0241 - 1866625-1868082,1868892-1869080
          Length = 548

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 286 IFIHIYLHVTMFYGPYLCCTTAQWASHWFAYPCYVAATICVTAGAHRL 429
           +  HIY  +T  YGP   CT   W   W A P    A +    G H +
Sbjct: 319 VLYHIY-GLTETYGPATVCT---WMPEWDALPAEERARLKARQGFHHI 362


>09_06_0319 - 22293869-22293906,22294539-22295808
          Length = 435

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 112 AWSTAPISGPGLXNTSFFHLTLKIMS 35
           AW+  PIS  GL +TSF H+  K ++
Sbjct: 185 AWTCHPISLHGLVDTSFTHINTKAIT 210


>08_02_0230 - 14572854-14574632
          Length = 592

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
 Frame = +1

Query: 337 CC---TTAQWASHWFAYPC 384
           CC   TT +W   W AYPC
Sbjct: 192 CCLKVTTTEWLWDWIAYPC 210


>06_01_0349 +
           2529279-2530446,2532232-2533036,2533066-2533106,
           2533219-2533424
          Length = 739

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 134 RATLYFTRVE--YCSHLWAGAPKYQL 63
           +ATL   +++  +C HLW  APK+ L
Sbjct: 502 KATLQLPKLDTIWCHHLWYAAPKFPL 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,303,369
Number of Sequences: 37544
Number of extensions: 265102
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)