Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30748.Seq
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)                   29   1.6  
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_38386| Best HMM Match : PALP (HMM E-Value=4.1e-10)                  27   8.6  
SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)                   27   8.6  

>SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)
          Length = 848

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 339 LYDSAMGLTLVRVPLLCSSNDLRDSWSSQTVGATNLTKRD 458
           ++ S  G+T  + P  C+  DL DS      GAT+L  +D
Sbjct: 172 VFRSGSGITDAQAPFQCAGPDLGDSLLKANPGATSLPLQD 211


>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 220 TXIFYFGYNQSIIRLILCHFRIM*TPRTSALHFTLLAWSTAPISGPGL 77
           T   Y     S+  ++LC+ +I  T R      T +  +T PI+GP +
Sbjct: 729 TLFVYISGGTSMFVVLLCYQKIFQTIRNHQGRVTAMQQNTNPINGPNI 776


>SB_38386| Best HMM Match : PALP (HMM E-Value=4.1e-10)
          Length = 736

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 290 NIFL*TISYSLGLPLKV*HYHVLDXNLLFRLQS 192
           NI    ++Y++GLPLK+ H  V D N++ R+ S
Sbjct: 571 NITAGYVAYNMGLPLKL-HAAVNDNNIVHRMIS 602


>SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)
          Length = 1172

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 351  RCRTTKIWPIKHCNV*INMYEYIFIDDFIFSRXTTEGLTLSCSRLE 214
            RC  T +  I+  N+  N ++   +DDF+F   TT   T  CS  E
Sbjct: 1039 RCNRTILKVIRIANLQGNDWKKA-LDDFLFQYRTTNHATTGCSPAE 1083


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,591,848
Number of Sequences: 59808
Number of extensions: 319682
Number of successful extensions: 691
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)