Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30748.Seq
(497 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF260243-1|AAF97549.1| 338|Caenorhabditis elegans stearoyl-CoA ... 50 9e-07
AF022972-8|AAC48239.1| 338|Caenorhabditis elegans Fatty acid de... 50 9e-07
Z82073-6|CAB04924.1| 333|Caenorhabditis elegans Hypothetical pr... 47 7e-06
AF260242-1|AAF97548.1| 333|Caenorhabditis elegans palmitoyl-CoA... 47 7e-06
Z95123-2|CAB08356.1| 339|Caenorhabditis elegans Hypothetical pr... 47 9e-06
AF260244-1|AAF97550.1| 339|Caenorhabditis elegans stearoyl-CoA ... 47 9e-06
AF022975-6|AAB70671.2| 293|Caenorhabditis elegans Serpentine re... 29 2.5
Z81109-12|CAE17917.2| 364|Caenorhabditis elegans Hypothetical p... 27 7.6
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 27 7.6
Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical pr... 27 10.0
U64846-4|AAG24111.1| 327|Caenorhabditis elegans Serpentine rece... 27 10.0
U40933-4|AAA81674.1| 778|Caenorhabditis elegans Caenorhabditis ... 27 10.0
>AF260243-1|AAF97549.1| 338|Caenorhabditis elegans stearoyl-CoA
desaturase FAT-7 protein.
Length = 338
Score = 50.0 bits (114), Expect = 9e-07
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +1
Query: 256 PREYEIVYKNIFIHIYLHVTMFYGPYLCCTTAQWASHWFAYPCYVAATICVTAGAHRLW 432
P + EIV++N+ + LHV G Y A+W + F++ YV + +TAGAHRLW
Sbjct: 41 PYKMEIVWRNVALFAALHVAAAIGLYELVFHAKWQTAVFSFALYVFSGFGITAGAHRLW 99
>AF022972-8|AAC48239.1| 338|Caenorhabditis elegans Fatty acid
desaturase protein 7 protein.
Length = 338
Score = 50.0 bits (114), Expect = 9e-07
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +1
Query: 256 PREYEIVYKNIFIHIYLHVTMFYGPYLCCTTAQWASHWFAYPCYVAATICVTAGAHRLW 432
P + EIV++N+ + LHV G Y A+W + F++ YV + +TAGAHRLW
Sbjct: 41 PYKMEIVWRNVALFAALHVAAAIGLYELVFHAKWQTAVFSFALYVFSGFGITAGAHRLW 99
>Z82073-6|CAB04924.1| 333|Caenorhabditis elegans Hypothetical
protein W06D12.3 protein.
Length = 333
Score = 47.2 bits (107), Expect = 7e-06
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +1
Query: 268 EIVYKNIFIHIYLHVTMFYGPYLCCTTAQWASHWFAYPCYVAATICVTAGAHRLWGPQIL 447
EIV+KN+ + + LH+ G Y A+WA+ + + + ++ VT GAHRLW +
Sbjct: 37 EIVWKNVALFVALHIGALVGLYQLVFQAKWATVGWVFLLHTLGSMGVTGGAHRLWAHRAY 96
Query: 448 QSEIT 462
++ ++
Sbjct: 97 KATLS 101
>AF260242-1|AAF97548.1| 333|Caenorhabditis elegans palmitoyl-CoA
fatty acid desaturaseFAT-5 protein.
Length = 333
Score = 47.2 bits (107), Expect = 7e-06
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +1
Query: 268 EIVYKNIFIHIYLHVTMFYGPYLCCTTAQWASHWFAYPCYVAATICVTAGAHRLWGPQIL 447
EIV+KN+ + + LH+ G Y A+WA+ + + + ++ VT GAHRLW +
Sbjct: 37 EIVWKNVALFVALHIGALVGLYQLVFQAKWATVGWVFLLHTLGSMGVTGGAHRLWAHRAY 96
Query: 448 QSEIT 462
++ ++
Sbjct: 97 KATLS 101
>Z95123-2|CAB08356.1| 339|Caenorhabditis elegans Hypothetical
protein VZK822L.1 protein.
Length = 339
Score = 46.8 bits (106), Expect = 9e-06
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +1
Query: 256 PREYEIVYKNIFIHIYLHVTMFYGPYLCCTTAQWASHWFAYPCYVAATICVTAGAHRLW 432
P + EIV++N+ + LH G Y A+W + F + YV +TAGAHRLW
Sbjct: 42 PYKMEIVWRNVALFAALHFAAAIGLYQLIFEAKWQTVIFTFLLYVFGGFGITAGAHRLW 100
>AF260244-1|AAF97550.1| 339|Caenorhabditis elegans stearoyl-CoA
desaturase FAT-6 protein.
Length = 339
Score = 46.8 bits (106), Expect = 9e-06
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +1
Query: 256 PREYEIVYKNIFIHIYLHVTMFYGPYLCCTTAQWASHWFAYPCYVAATICVTAGAHRLW 432
P + EIV++N+ + LH G Y A+W + F + YV +TAGAHRLW
Sbjct: 42 PYKMEIVWRNVALFAALHFAAAIGLYQLIFEAKWQTVIFTFLLYVFGGFGITAGAHRLW 100
>AF022975-6|AAB70671.2| 293|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 12 protein.
Length = 293
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 307 VDKYV*IYFYRRFHIL*XYH*RFDTIMF*TXIFYFGYNQSIIRLILCHFRI 155
V++ V YF ++H YH F I +G+N+ I+ + C F++
Sbjct: 101 VERVVAAYFPIQYH---NYHQSFPKIPIMITAIIYGFNEDIVLYVFCDFQL 148
>Z81109-12|CAE17917.2| 364|Caenorhabditis elegans Hypothetical
protein R10D12.17 protein.
Length = 364
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 5 FSLVYS*YFS-GHYFKSQMEEAGIXEPRP 88
FS + S S HY+K +EE G+ P+P
Sbjct: 140 FSFILSGIMSISHYYKDHIEEVGLCIPQP 168
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 143 WSLHNAKMAQNQTYNGLIVTEIEDSSLEHDSVKPSVVXLEN 265
W L + TY G + EIE S H S +P VV N
Sbjct: 499 WRLPQRFLGDKVTYGGKMEFEIEFSGSGHHSSEPMVVLKGN 539
>Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical
protein R06C7.9 protein.
Length = 729
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +1
Query: 295 HIYLHVTMFYGPYLC--CTTAQWASHW 369
HIYLH++ Y Y C C T+ +AS W
Sbjct: 219 HIYLHLSQEYKVYHCDGCNTS-FASKW 244
>U64846-4|AAG24111.1| 327|Caenorhabditis elegans Serpentine
receptor, class t protein38 protein.
Length = 327
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +1
Query: 310 VTMFYGPYLCCTTAQWASHWFAYPCYVAATICVTAGAHRLW 432
V +F +L C Q A + + + CVT H LW
Sbjct: 240 VQVFVQSFLICVATQLAGIIYVFMNLFQVSTCVTVIGHALW 280
>U40933-4|AAA81674.1| 778|Caenorhabditis elegans Caenorhabditis
zeste white 10 (drosophila) homolog protein 1 protein.
Length = 778
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +2
Query: 35 GHYFKSQMEEAGIXEPRPRDGSSTPRE*SKV*RACSWSLHNAKMAQNQTYNGLIVTEIED 214
G F +M+E G + + + + V R C + A N+TY+ L+ ++D
Sbjct: 355 GEVFVERMKELGFFSQKAKLLFTLDTDTIFVTRRCFAIVSKANKLINETYDKLVTVGVDD 414
Query: 215 SSLE 226
S+++
Sbjct: 415 SAIK 418
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,540,019
Number of Sequences: 27780
Number of extensions: 238576
Number of successful extensions: 545
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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