Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30748.Seq
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +1

Query: 271 IVYKNIFIHIYLHVTMFYGPYLCCTTAQWASHW 369
           +VY ++  H+   +   YGP +      W S W
Sbjct: 204 LVYFHLQRHMGNFLIQVYGPCVLLVVLSWVSFW 236


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 241 TFSGXPREYEIVYKNIFIHIYLHVTMFYGP 330
           T+S     + +V +N F  IY  +  FY P
Sbjct: 185 TYSETGPSHCVVCQNFFYQIYATLGSFYIP 214


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 164 FSHYVNSKNKRATLYFTRVEYC 99
           F H++N   +  + YFT    C
Sbjct: 318 FGHHLNRLGREISTYFTFTRPC 339


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 267 IFSRXTTEGLTLSCS 223
           ++ R TTEG   +CS
Sbjct: 193 VWGRYTTEGFLTTCS 207


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/26 (23%), Positives = 13/26 (50%)
 Frame = +1

Query: 355 WASHWFAYPCYVAATICVTAGAHRLW 432
           W SH   + C +++ +C+      +W
Sbjct: 526 WWSHVLGWLCGLSSMLCIPGYMIYIW 551


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/26 (23%), Positives = 13/26 (50%)
 Frame = +1

Query: 355 WASHWFAYPCYVAATICVTAGAHRLW 432
           W SH   + C +++ +C+      +W
Sbjct: 579 WWSHVLGWLCGLSSMLCIPGYMIYIW 604


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 267 IFSRXTTEGLTLSCS 223
           ++ R TTEG   +CS
Sbjct: 193 VWGRYTTEGFLTTCS 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,322
Number of Sequences: 438
Number of extensions: 2854
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)