Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30748.Seq
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45910.1 68415.m05709 protein kinase family protein / U-box d...    29   1.7  
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p...    27   9.3  
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p...    27   9.3  

>At2g45910.1 68415.m05709 protein kinase family protein / U-box
           domain-containing protein contains Pfam profiles PF00069
           Eukaryotic protein kinase domain,  PF04564: U-box
           domain; supported by tandem duplication of  (GI:3386604)
           (TIGR_Ath1:At2g45920) [Arabidopsis thaliana]
          Length = 834

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 472 DLK-R*SRFVRFVAPTVCELQLSRKSLLLHNR 380
           DLK R + FVR  APT+C++  + K  L+H R
Sbjct: 174 DLKSRKAIFVRREAPTLCQIWFTCKGYLIHTR 205


>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 909

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 26  YFSGHYFKSQMEEAGIXEPRPRDGS 100
           Y+    FK Q   AG+  PRP+D S
Sbjct: 753 YWGASSFKQQAISAGLPSPRPKDVS 777


>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 1187

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 26  YFSGHYFKSQMEEAGIXEPRPRDGS 100
           Y+    FK Q   AG+  PRP+D S
Sbjct: 753 YWGASSFKQQAISAGLPSPRPKDVS 777


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,806,678
Number of Sequences: 28952
Number of extensions: 215951
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)