Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30747.Seq
         (299 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   2.9  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    21   2.9  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    21   2.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    20   5.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   6.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   6.6  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    20   6.6  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    20   6.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    20   6.6  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    20   6.6  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    20   6.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    20   6.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    20   6.6  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    20   6.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           20   6.6  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    20   6.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    20   6.6  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    19   8.7  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    19   8.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     19   8.7  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 15  QRKMSCPYNAEQLDQLKSFVEICKTQ-PQLLHHPQLA 122
           QR+    + A QLD+L+   E  +TQ P +    +LA
Sbjct: 220 QRRSRTTFTAHQLDELEKAFE--RTQYPDIYTREELA 254


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 70  KDFNWSNCSALYG 32
           KDF    C+ALYG
Sbjct: 93  KDFQLRLCAALYG 105


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 70  KDFNWSNCSALYG 32
           KDF    C+ALYG
Sbjct: 93  KDFQLRLCAALYG 105


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -2

Query: 40  LYGQLIFLCR 11
           +Y QL+F+C+
Sbjct: 217 IYSQLVFMCK 226


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 167 GRQ*YTKRYQIILKKRQLWM 108
           GR+   K Y++  ++RQL M
Sbjct: 521 GREEQAKYYELARRERQLHM 540


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 167 GRQ*YTKRYQIILKKRQLWM 108
           GR+   K Y++  ++RQL M
Sbjct: 413 GREEQAKYYELARRERQLHM 432


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 294 TPSISNSTSDSG 259
           TPS SN+T  SG
Sbjct: 131 TPSNSNATKSSG 142


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 294 TPSISNSTSDSG 259
           TPS SN+T  SG
Sbjct: 131 TPSNSNATKSSG 142


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 294 TPSISNSTSDSG 259
           TPS SN+T  SG
Sbjct: 131 TPSNSNATKSSG 142


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 138 DNP*KTPIVDGVIVAAVFYIF 76
           D P K+ +V  ++  A+F +F
Sbjct: 172 DEPRKSSLVQLILTQAIFLMF 192


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 138 DNP*KTPIVDGVIVAAVFYIF 76
           D P K+ +V  ++  A+F +F
Sbjct: 98  DEPRKSSLVQLILTQAIFLMF 118


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 294 TPSISNSTSDSG 259
           TPS SN+T  SG
Sbjct: 131 TPSNSNATKSSG 142


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 294 TPSISNSTSDSG 259
           TPS SN+T  SG
Sbjct: 131 TPSNSNATKSSG 142


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 294 TPSISNSTSDSG 259
           TPS SN+T  SG
Sbjct: 87  TPSNSNATKSSG 98


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 294 TPSISNSTSDSG 259
           TPS SN+T  SG
Sbjct: 131 TPSNSNATKSSG 142


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 294 TPSISNSTSDSG 259
           TPS SN+T  SG
Sbjct: 131 TPSNSNATKSSG 142


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 294 TPSISNSTSDSG 259
           TPS SN+T  SG
Sbjct: 131 TPSNSNATKSSG 142


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 120 AFFKDYLISLGVSLPTATFGA 182
           AF    L+S+GVSL    F A
Sbjct: 250 AFSVQLLVSIGVSLFDVLFQA 270


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 120 AFFKDYLISLGVSLPTATFGA 182
           AF    L+S+GVSL    F A
Sbjct: 250 AFSVQLLVSIGVSLFDVLFQA 270


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = -2

Query: 58  WSNCSALYGQLI 23
           W NC A Y  ++
Sbjct: 163 WENCRAAYEDIV 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,415
Number of Sequences: 336
Number of extensions: 1344
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5429307
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)