Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30747.Seq
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   1.8  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   2.4  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   3.1  
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    24   5.5  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    24   5.5  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    23   7.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    23   7.3  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    23   7.3  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    23   7.3  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    23   9.6  
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||...    23   9.6  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    23   9.6  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    23   9.6  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    23   9.6  

>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 60  LKSFVEICKTQPQLLHHPQLAFF--KDYLISLGVSLPTATFGAK 185
           L+S++    T P LL+ P+L  F   DY  S  ++    T G K
Sbjct: 183 LQSWLNYVSTNPNLLYDPELQLFVESDYGYSPLINTGNPTSGLK 226


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 109 WCNSCGCVLHISTKDFNWSN 50
           WC  C C+ H    D+  SN
Sbjct: 366 WCTYCLCLAHYKLGDYEESN 385


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 64  NPLWKYVKHSRNYYTIHNWRFLRI 135
           NPL++++  + N   IH W F R+
Sbjct: 412 NPLYQWMIKAMNLRKIHVWEFSRM 435


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 165 SAMIHQEISDNP*KTPIVDGVIV 97
           +A+I    SDN   TP+VDG+I+
Sbjct: 150 TALIVDIGSDNASVTPVVDGLII 172


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 106 CNSCGCVLHISTKDFNWS 53
           CN+ GC+ +++T D N S
Sbjct: 144 CNAVGCITNLATLDENKS 161


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 54  DQLKSFVEICKT 89
           D +K+FVE+CKT
Sbjct: 120 DLIKNFVELCKT 131


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 67  DFNWSNCSALYGQLIFL 17
           DF W NC  + G  IF+
Sbjct: 673 DFLWRNCGIILGFAIFI 689


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 108 GVIVAAVFYIFPQRIST 58
           GV++A VFYIF    ST
Sbjct: 10  GVLLAIVFYIFTYGFST 26


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 117 IVDGVIVAAVFYIFPQRISTGLIAQRCTGNSFFFVGF 7
           +V  VI A+V +    +  TGL+A   +GN F  + F
Sbjct: 617 LVWNVISASVQWTLASKF-TGLLASSSSGNDFAVIDF 652


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 127 KNANCGWCNSCGCVLHISTKDFNWSNCSALYG 32
           KN   G  N   C+   + +DF +S+ + +YG
Sbjct: 104 KNNISGTINLIECMKKYNVRDFVFSSSATVYG 135


>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 51  LDQLKSFVEICKTQPQLLHHP 113
           LD  KS+    KTQP L + P
Sbjct: 158 LDNKKSYYLRTKTQPSLFYRP 178


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 60   LKSFVEICKTQPQLLHH 110
            LK  +++CK  P +L+H
Sbjct: 1253 LKFCIKVCKETPSMLYH 1269


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 36   YNAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISL-GVS 158
            +N    + LKS + +C+    L   P L    D +ISL G+S
Sbjct: 1181 FNIVSANILKSKLIVCEADSTLFGDPVLRTLPDSVISLPGIS 1222


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 100 SCGCVLHISTKDFNWSNCSALYGQLIFL 17
           SC  +  IS    +WS  S L G+++FL
Sbjct: 120 SCVIIGSISGIILSWSPSSFLLGKIVFL 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,147,177
Number of Sequences: 5004
Number of extensions: 19590
Number of successful extensions: 49
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)