Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30747.Seq
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    57   3e-09
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    28   1.2  
06_01_0623 + 4536817-4536868,4537129-4537328,4537401-4537609,453...    26   6.3  
05_05_0151 - 22759618-22760017,22760694-22760752                       25   8.3  
05_03_0211 + 10236867-10237075,10238036-10238270,10238433-102386...    25   8.3  
01_06_1242 + 35679861-35679910,35680098-35680521                       25   8.3  

>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 25/46 (54%), Positives = 32/46 (69%)
 Frame = +3

Query: 39  NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATF 176
           +A ++ +L++FVE CK  P LL  P LAFF+DYL SLG  LP A F
Sbjct: 227 DASRVGELRTFVEACKKDPSLLADPNLAFFRDYLESLGAHLPAAAF 272


>07_03_1575 -
           27848977-27849095,27849254-27849302,27850270-27850287,
           27850798-27851786,27852119-27852733,27852893-27852921,
           27853990-27854453,27854530-27854654,27854743-27855025,
           27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 154 TPRDIR*SLKNANCGWCNSC 95
           T + +   L+   CGWCNSC
Sbjct: 756 TDQKLSVELRKEKCGWCNSC 775


>06_01_0623 +
           4536817-4536868,4537129-4537328,4537401-4537609,
           4538531-4538954
          Length = 294

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 106 CNSCGCVLHISTKDFNWSNCSA 41
           C SC  ++H+S  D  WS+  A
Sbjct: 157 CRSCAGMVHMSGVDLEWSHSMA 178


>05_05_0151 - 22759618-22760017,22760694-22760752
          Length = 152

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 106 CNSCGCVLHISTKDFNWSNCSALYGQLI 23
           C  CG  L++S+   N +N  + YG+ I
Sbjct: 21  CGYCGYALNLSSSTRNTANIGSKYGKQI 48


>05_03_0211 +
           10236867-10237075,10238036-10238270,10238433-10238602,
           10240324-10240466,10240590-10240767,10241441-10242008,
           10243001-10243113,10244521-10244764,10245201-10245278,
           10246500-10246727
          Length = 721

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/50 (22%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +3

Query: 6   RNLQRKMSCPYNAEQLDQLKSFVEICKTQPQLLHHPQLA--FFKDYLISL 149
           ++++ +++ P+ +   D+   +     T+P +L  P+LA  F +DY +++
Sbjct: 286 QSVKPELTGPWGSRLFDKAVMYKSATLTEPVILEFPELAGHFRRDYWLAI 335


>01_06_1242 + 35679861-35679910,35680098-35680521
          Length = 157

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 106 CNSCGCVLHISTKDFNWSNCSALYGQLI 23
           C  CG  L++S+   N +N  + YG+ I
Sbjct: 18  CGYCGYALNLSSSTRNTANIGSKYGKQI 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,128,647
Number of Sequences: 37544
Number of extensions: 118969
Number of successful extensions: 243
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)