Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30747.Seq
         (299 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21494| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_49785| Best HMM Match : EGF (HMM E-Value=0.00078)                   26   4.9  
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)                26   4.9  
SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)                    26   4.9  

>SB_21494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 88  HSRNYYTIHNWRFLRII 138
           H R+YY   NW FLR++
Sbjct: 86  HLRDYYDYINWAFLRVL 102


>SB_49785| Best HMM Match : EGF (HMM E-Value=0.00078)
          Length = 261

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 67  PLWKYVKHSRNYYTIHNWRFLRI 135
           PL+  ++  RN   I NWRFL +
Sbjct: 225 PLYALLRDHRNKSAIGNWRFLAV 247


>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
          Length = 622

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 255 FPRQMTIPLFLHX*IFYHQQ 196
           +P Q+++P+FLH   FY  Q
Sbjct: 2   YPSQVSVPVFLHHCFFYKLQ 21


>SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)
          Length = 999

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 199 AAVKSLAPKVAVGNDTPRDIR*SLKNANCGWCNSCGCVLHISTKDFNWSNCSA 41
           A V+ +    ++  D P +IR  +  A C  C   G  +HIS+K+F    C++
Sbjct: 75  ATVRLIKTGESISKDFP-EIREEMIAA-CKDCRGAGDTMHISSKEFADDPCTS 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,373,686
Number of Sequences: 59808
Number of extensions: 137771
Number of successful extensions: 271
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)