Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30747.Seq
         (299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical pr...    51   1e-07
Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical pr...    51   1e-07
Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical pr...    27   1.9  
Z72507-14|CAA96630.2|  383|Caenorhabditis elegans Hypothetical p...    26   4.4  
U41270-5|AAA82442.2|  364|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical pr...    25   7.6  
U40959-5|AAA81769.1|  531|Caenorhabditis elegans Udp-glucuronosy...    25   7.6  
AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical ...    25   7.6  

>Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 60  LKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLP 164
           LK FV +C+  P +LH P+  FFKDYL+SLG +LP
Sbjct: 7   LKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLP 41


>Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 60  LKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLP 164
           LK FV +C+  P +LH P+  FFKDYL+SLG +LP
Sbjct: 7   LKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLP 41


>Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical
           protein T07C12.9 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 86  NTAATITPSTIGVF*GLSDISWCIIADRYFWC 181
           NTA  + P    ++ G+ + +WC    R F C
Sbjct: 208 NTAGAVKPGGYLIYGGIFEETWCSFGGRKFTC 239


>Z72507-14|CAA96630.2|  383|Caenorhabditis elegans Hypothetical
           protein F17C11.8 protein.
          Length = 383

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 63  KSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPT--ATFGAKD 188
           KS  E  +++   +   +   FK YL+SLGVS P   +TF   D
Sbjct: 194 KSISEKVRSRKGEISEDETIAFKSYLLSLGVSDPVTKSTFVGSD 237


>U41270-5|AAA82442.2|  364|Caenorhabditis elegans Hypothetical
           protein AH9.4 protein.
          Length = 364

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 79  YVKHSRNYYTIHNWRFLRII*YLLVYH 159
           ++ HS + +++  W FL ++ Y+ V+H
Sbjct: 91  FLIHSTSAFSVWCWFFLSVLRYIAVFH 117


>Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical
           protein C14H10.4 protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 120 PIVDGVIVAAVFYIF--PQRISTGLI 49
           PI+ GVI + VFY+F  P  IS   +
Sbjct: 137 PILPGVIYSCVFYLFCLPDNISDSYV 162


>U40959-5|AAA81769.1|  531|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein46 protein.
          Length = 531

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 66  SFVEICKTQPQLLHHPQLAFF 128
           +FV     QP +LHHP+L  F
Sbjct: 349 AFVSDWLPQPAILHHPRLKLF 369


>AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical
           protein T05B4.12 protein.
          Length = 244

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 115 CGWCNSCGCVLHISTKDFNWSNCSAL 38
           CG+CNS GCV  ++    + S C+ +
Sbjct: 146 CGFCNSGGCVDAVTNCGNDLSICNTV 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,291,607
Number of Sequences: 27780
Number of extensions: 108399
Number of successful extensions: 306
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)