Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30747.Seq
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   0.81 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   3.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   4.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   5.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   5.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   5.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 0.81
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 88  VLHISTKDFNWSNCSALYGQLIFLC 14
           ++ +  K + W + S L G   FLC
Sbjct: 380 LVSLDKKQYTWRHTSVLIGWSAFLC 404


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 100 SCGCVLHISTKDFNWSNCSALYGQL 26
           S G +LHI   +     C   YG +
Sbjct: 109 SAGSLLHICMLELGHEVCGRFYGNI 133


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -2

Query: 124 NANCGWCN 101
           N NCGW N
Sbjct: 150 NCNCGWKN 157


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 279 NSTSDSGSFPRQMTI 235
           NSTS    FPR+ T+
Sbjct: 412 NSTSSPKPFPRRATL 426


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 79  YVKHSRNYYTIHNW 120
           ++ HS NY  + NW
Sbjct: 661 WLNHSPNYDQVTNW 674


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 66  ISTGLIAQRCTGNSFFFVGFVN 1
           I +G +A+RC   ++    F+N
Sbjct: 134 IVSGAMAERCNFKAYCLFSFLN 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,484
Number of Sequences: 438
Number of extensions: 1493
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)