Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30747.Seq
(299 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 51 1e-07
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 48 9e-07
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 27 3.1
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 27 3.1
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 26 4.1
At2g35580.1 68415.m04357 serpin family protein / serine protease... 26 5.4
At5g55350.1 68418.m06897 membrane bound O-acyl transferase (MBOA... 25 7.1
At3g62850.1 68416.m07061 zinc finger protein-related contains Pf... 25 7.1
At3g18770.1 68416.m02382 expressed protein 25 7.1
At1g16650.1 68414.m01994 expressed protein 25 7.1
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ... 25 9.4
At2g04680.1 68415.m00478 DC1 domain-containing protein contains ... 25 9.4
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +3
Query: 39 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPT 167
++ +L +LK F++ CK+ P LL P L+FF+DYL SLG +PT
Sbjct: 2 DSTKLSELKVFIDQCKSDPSLLTTPSLSFFRDYLESLGAKIPT 44
>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
profile: PF00085 Thioredoxin
Length = 380
Score = 48.4 bits (110), Expect = 9e-07
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +3
Query: 39 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATFGAKDF 191
+A Q+ +L+ FVE K P +LH P L FFK+YL SLG +P +D+
Sbjct: 3 DAIQVAELRRFVEQLKLNPSILHDPSLVFFKEYLRSLGAQVPKIEKTERDY 53
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 33 PYN--AEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATFGAKDFTAAG 203
P+N A Q+ + V+ + LL H + F ++GV++ TA F +DF G
Sbjct: 171 PHNEIAAQICRQAGLVKRLEKSDNLLEHQEDDNFAIVFAAMGVNMETAQFFKRDFEENG 229
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 33 PYN--AEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATFGAKDFTAAG 203
P+N A Q+ + V+ + LL H + F ++GV++ TA F +DF G
Sbjct: 171 PHNEIAAQICRQAGLVKRLEKSDNLLEHQEDDNFAIVFAAMGVNMETAQFFKRDFEENG 229
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 26.2 bits (55), Expect = 4.1
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -2
Query: 118 NCGWCNSC 95
NCGWC+SC
Sbjct: 943 NCGWCHSC 950
>At2g35580.1 68415.m04357 serpin family protein / serine protease
inhibitor family protein similar to protein zx [Hordeum
vulgare subsp. vulgare] GI:19071, serpin [Triticum
aestivum] GI:1885350; contains Pfam profile PF00079:
Serpin (serine protease inhibitor)
Length = 374
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 189 NLWHQK*RSAMIHQEISDNP*KTPIVDGVIVAAVFY 82
N W +K + +I + NP P+ D + A+F+
Sbjct: 139 NSWVEKQTNGLITNLLPSNPKSAPLTDHIFANALFF 174
>At5g55350.1 68418.m06897 membrane bound O-acyl transferase (MBOAT)
family protein / wax synthase-related contains
similarity to wax synthase wax synthase - Simmondsia
chinensis, PID:g5020219 similar to wax synthase
[gi:5020219] from Simmondsia chinensis
Length = 345
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 105 VIVAAVFYIFPQRISTGLIAQRCTGNSFFFVGFV 4
V++ + FP +G+I +R +F F+GFV
Sbjct: 298 VVMTGGWLFFPHLARSGMI-ERLADEAFLFIGFV 330
>At3g62850.1 68416.m07061 zinc finger protein-related contains Pfam
profiles PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger, C2H2 type
Length = 472
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 105 HHPQLAFFKDYLISLGVS 158
HHP + F Y+I+L VS
Sbjct: 396 HHPLMTLFLSYIITLSVS 413
>At3g18770.1 68416.m02382 expressed protein
Length = 625
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 14 TKKNELPVQR*AIRPVEILCGNM 82
T+K E +Q+ + PVE +CG +
Sbjct: 229 TRKEEAEMQKFSFTPVETICGRL 251
>At1g16650.1 68414.m01994 expressed protein
Length = 521
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 21 KMSCPYNAEQLDQLKSFVEICKTQPQLLHHPQLAFFKD 134
K SC AE L+ + + ++ K L++ + FFKD
Sbjct: 5 KFSCKTRAETLEWITAIIDFLKPFSFLINAHVVNFFKD 42
>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 106 CNSCGCVLHIS 74
CN CG +LHIS
Sbjct: 574 CNDCGVILHIS 584
>At2g04680.1 68415.m00478 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 657
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 106 CNSCGCVLHIS 74
CN CG +LHIS
Sbjct: 579 CNDCGTILHIS 589
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,895,033
Number of Sequences: 28952
Number of extensions: 100385
Number of successful extensions: 255
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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