Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30746.Seq
         (440 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   2.2  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   6.9  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    20   9.1  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 171 AKSKNHTNHNQNRKAHRNGIKKPRKTRHXPP 263
           ++SK      +  +  RN   +PR +R  PP
Sbjct: 213 SRSKRQPKTGREDQTRRNPYYRPRTSRTEPP 243


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 245 LPWLFDTISVSFAVLVMI 192
           L W + TIS++F + V +
Sbjct: 3   LKWYYITISMAFIIFVSL 20


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 266 QGWXVPGLPWLFDTISVS 213
           QG+ VPGL  L  T+S++
Sbjct: 256 QGFAVPGLSPLGHTLSMN 273


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,431
Number of Sequences: 336
Number of extensions: 1338
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)