Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30746.Seq
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    60   2e-10
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   5.2  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    25   6.8  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 59.7 bits (138), Expect = 2e-10
 Identities = 24/29 (82%), Positives = 28/29 (96%)
 Frame = +3

Query: 168 MAKSKNHTNHNQNRKAHRNGIKKPRKTRH 254
           MAKSKNHTNHNQN+KAHRNGIK+P+K R+
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRY 29


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 168 MAKSKNHTNHNQNRKAHRNGIKKPRK 245
           +AK  +  NHN ++ A +  I +PRK
Sbjct: 340 LAKRDDRKNHNHSKPATQANILQPRK 365


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 177 SKNHTNHNQNRK-AHRNGIKKPRKTRHXPP 263
           S N+ NHNQ++   +R+  +  ++ ++ PP
Sbjct: 182 SSNNKNHNQSKNPQNRSNSRSKQRNKNAPP 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,509
Number of Sequences: 5004
Number of extensions: 21021
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)