Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30746.Seq
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0661 - 16726958-16726966,16727133-16727234                       51   4e-07
01_02_0115 - 11248021-11248101,11249017-11249118                       51   4e-07
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944...    28   3.8  
02_01_0705 - 5259949-5263887,5266207-5266509                           27   5.1  

>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 21/28 (75%), Positives = 25/28 (89%)
 Frame = +3

Query: 168 MAKSKNHTNHNQNRKAHRNGIKKPRKTR 251
           MAKSKNHT HNQ+ KAH+NGIKKP++ R
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHR 28


>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 21/28 (75%), Positives = 25/28 (89%)
 Frame = +3

Query: 168 MAKSKNHTNHNQNRKAHRNGIKKPRKTR 251
           MAKSKNHT HNQ+ KAH+NGIKKP++ R
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHR 28



 Score = 30.7 bits (66), Expect = 0.54
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 239 KEDQAXSTLGMXPXFLRXQRFCKKGNLK 322
           K  +  ST GM P FLR QR+ +K N K
Sbjct: 25  KRHRQTSTKGMDPKFLRNQRYSRKHNKK 52


>09_06_0010 -
           20193577-20193921,20194014-20194160,20194239-20194495,
           20194619-20194826
          Length = 318

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 159 SIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHXPPLAWXQXF 284
           S+   ++KN  +HN   KA  NG  KPR     PP++  + F
Sbjct: 214 SLDAIRAKNAASHN---KASGNGHAKPRAPHLPPPVSQRRQF 252


>02_01_0705 - 5259949-5263887,5266207-5266509
          Length = 1413

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 142 FTGLKTPSKWQSQRIIQIITKTAKLTEMVSKSQGR 246
           FTG+     W+S  I+ I     +LT M+++S G+
Sbjct: 602 FTGMIPDRLWESSTILDISLSDNQLTGMITESIGK 636


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,258,840
Number of Sequences: 37544
Number of extensions: 131362
Number of successful extensions: 311
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)