Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30746.Seq
         (440 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08)                   29   1.7  
SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)                   29   1.7  
SB_9164| Best HMM Match : COX2_TM (HMM E-Value=3.7)                    29   1.7  
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08)
          Length = 294

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 210 CGFGYDLYDSLTLPF*W 160
           CGFGY LY S+T  + W
Sbjct: 41  CGFGYQLYKSITFYYEW 57


>SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)
          Length = 538

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 210 CGFGYDLYDSLTLPF*W 160
           CGFGY LY S+T  + W
Sbjct: 41  CGFGYQLYKSITFYYEW 57


>SB_9164| Best HMM Match : COX2_TM (HMM E-Value=3.7)
          Length = 543

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +1

Query: 139 PFTGLKTPSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTXHPWHGSKXFKXXKVLQEG*P 318
           P +G+ T  +   + I+++IT T   +          G+  P  GS+       ++E  P
Sbjct: 111 PTSGMTTSMENDPEAIVEVITPTGASSTSTGARTTSAGSIAPTSGSRPTGMTTSMEED-P 169

Query: 319 EASQATREG 345
           EA Q T  G
Sbjct: 170 EAIQTTYSG 178


>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 210 KAHRNGIKKPRKTRH 254
           K HRNGIKKPR  R+
Sbjct: 175 KWHRNGIKKPRTNRY 189


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 336 SRGRLREKLPEKQRPRNE 389
           SRGR  EK PEKQR +++
Sbjct: 267 SRGRSAEKSPEKQRDKSD 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,912,669
Number of Sequences: 59808
Number of extensions: 158194
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)