Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30746.Seq
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.85 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.9  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +3

Query: 174 KSKNHTNHNQNRKAHRNGIKKPRKTRH 254
           +  NH NHN N+  H +        +H
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQH 446


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 225 HFCELCGFGYDLYDSLTLPF*WSFQSCKGKIKSLL 121
           + CE C   Y   +SLT       +   G +K LL
Sbjct: 36  YVCEFCNRRYRTKNSLTTHKSLQHRGSSGMLKRLL 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,738
Number of Sequences: 438
Number of extensions: 1514
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)