Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30745.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)               29   4.8  
SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)
          Length = 550

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +1

Query: 358 KVHVCTLSDIEY*NRRKY*NTSYHLIYLTWHGTST--VCEWCWCGMEF 495
           K HVC +        + Y  TS+   +L WH      VC W +CG  F
Sbjct: 354 KQHVCHVPGCG----KVYGKTSHLRAHLRWHSGERPFVCNWLFCGKRF 397


>SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +1

Query: 358 KVHVCTLSDIEY*NRRKY*NTSYHLIYLTWHGTST--VCEWCWCGMEF 495
           K HVC +        + Y  TS+   +L WH      VC W +CG  F
Sbjct: 340 KQHVCHIPGCG----KVYGKTSHLKAHLRWHTGERPFVCNWLFCGKSF 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,464,805
Number of Sequences: 59808
Number of extensions: 327898
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)