Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30745.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    29   3.0  
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:...    29   3.9  
At2g05120.1 68415.m00539 expressed protein                             28   6.8  

>At1g04600.1 68414.m00454 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 117  RESDQALTYWIPNTLTTNXSLQRSL 43
            +E D  L YW+ NT T    LQRSL
Sbjct: 1340 QEDDNHLAYWLTNTSTLLFLLQRSL 1364


>At2g33240.1 68415.m04072 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin my5A
            (SP:Q02440) {Gallus gallus}
          Length = 1770

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 114  ESDQALTYWIPNTLTTNXSLQRSL 43
            E D  L YW+ NT T    LQRSL
Sbjct: 1361 EDDSNLAYWLTNTSTLLFLLQRSL 1384


>At2g05120.1 68415.m00539 expressed protein 
          Length = 1234

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +1

Query: 439 LTWHGTSTVCEWCWCGMEFKIRYLVDTGK 525
           + WH  + VC   WC   F +  L +  +
Sbjct: 827 IPWHSQTVVCNGLWCIASFMLHLLTEASR 855


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,716,522
Number of Sequences: 28952
Number of extensions: 220695
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)