Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30738.Seq
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc... 116 3e-27
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc... 52 1e-07
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 31 0.13
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 31 0.17
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 26 6.6
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 8.7
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 8.7
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 8.7
>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 363
Score = 116 bits (280), Expect = 3e-27
Identities = 53/78 (67%), Positives = 65/78 (83%), Gaps = 2/78 (2%)
Frame = +3
Query: 510 VICEFPFKELARYHKNHGKEGTIVVTKVEEPSKYGVVVYDDNGQ--IESFIEKPQEFISN 683
VICE+PF +LA +HK HG EGTIVVTKVEEPSKYGVVV+ N + IE F+EKP EF+SN
Sbjct: 111 VICEYPFADLAAFHKAHGAEGTIVVTKVEEPSKYGVVVHYPNSESLIERFVEKPVEFVSN 170
Query: 684 KINXGMYLLNPSVLSRLD 737
+IN G+Y+LNPSVL R++
Sbjct: 171 RINGGIYILNPSVLDRIE 188
Score = 94.3 bits (224), Expect = 2e-20
Identities = 43/78 (55%), Positives = 58/78 (74%)
Frame = +1
Query: 256 VEFANKPILMHQIEALVEAGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHETEPLG 435
VEF NKP+++HQ+EAL AGVT ++LAV+YR E M + L + + V++TFS E EPLG
Sbjct: 26 VEFGNKPMILHQVEALAAAGVTDIVLAVNYRPEIMVEALKKYEKEYNVNITFSVENEPLG 85
Query: 436 TAGPLALARELLSTSSEP 489
TAGPLALAR++L+ P
Sbjct: 86 TAGPLALARDILAKDHSP 103
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +2
Query: 182 IRALILVGGYGTRLRPLTLSRPKP 253
++ALILVGG+GTRLRPLTL+ PKP
Sbjct: 1 MKALILVGGFGTRLRPLTLTLPKP 24
>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 414
Score = 51.6 bits (118), Expect = 1e-07
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Frame = +3
Query: 510 VICEFPFKELARYHKNHGKEGTIVVTKV--EEPSKYGVVVYDDN-GQIESFIEKPQEFIS 680
V C FP +EL H T++ TKV E+ S +G +V + + G++ +++KP ++S
Sbjct: 119 VCCSFPLQELLNVHHEKKALVTLMATKVSKEDASNFGCLVEEPSTGRVLHYVDKPSSYLS 178
Query: 681 NKINXGMYLLNPSVLSRL 734
N I+ G+Y+ + S+ +
Sbjct: 179 NIISCGIYIFDASIFDEI 196
Score = 29.5 bits (63), Expect = 0.53
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +2
Query: 188 ALILVGG--YGTRLRPLTLSRPKP 253
A+ILVGG GTR RPL+ PKP
Sbjct: 5 AVILVGGPSRGTRFRPLSFDVPKP 28
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 597 EPSKYGVVVYDDNGQIESFIEKPQEFISNKINXGMYLLNPS 719
E + VV + G + FIE F +K N G+YLLN S
Sbjct: 31 EAPRRSAVVSNPLGNLGIFIESNYSFADHKYNSGIYLLNES 71
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 31.1 bits (67), Expect = 0.17
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 164 DKKLEEIRALILVGGYGTRLRPLTLSRPK---PRSNSP 268
+K ++A++L Y R RPLTL +P+ P +N+P
Sbjct: 12 EKPKHALQAIVLSDSYNYRFRPLTLDKPRCLLPLANTP 49
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 647 KFYRKTTRIYLKQN*XRHVFIKPIGLKQIRLRP 745
KF K L++ RHVF+ P L +++L P
Sbjct: 6 KFTVKINDGSLRRQQTRHVFLSPAALNRLKLSP 38
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = -2
Query: 519 HKLHRVQYKEWFRTGAEQFPGKCQWSC-CSQWFSLM 415
H +H YKEWF G + C C C F M
Sbjct: 1284 HVMHEDCYKEWFSNG-DSISQSCSSGCGCKCQFQHM 1318
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 541 ASSLNGNSQITQSSIQRMVPNW 476
AS + +S+ +SSIQR +PNW
Sbjct: 794 ASIILLDSRYNRSSIQRKLPNW 815
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 2 SKQNLCLRTYIHTPLETNLAECAY 73
+++NLC+RTY+ PL EC +
Sbjct: 2112 NRRNLCIRTYVVIPLN---EECGF 2132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,026
Number of Sequences: 5004
Number of extensions: 54512
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -