Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30738.Seq
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU457741-18|CAM36360.1| 365|Caenorhabditis elegans Hypothetical... 119 2e-27
AC006780-7|AAF60648.1| 394|Caenorhabditis elegans Hypothetical ... 44 2e-04
AC006780-6|AAF60647.1| 401|Caenorhabditis elegans Hypothetical ... 44 2e-04
Z48009-7|CAA88083.1| 329|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF016664-9|AAB66065.2| 320|Caenorhabditis elegans Serpentine re... 30 2.0
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr... 29 2.6
>CU457741-18|CAM36360.1| 365|Caenorhabditis elegans Hypothetical
protein C42C1.5 protein.
Length = 365
Score = 119 bits (287), Expect = 2e-27
Identities = 49/76 (64%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Frame = +3
Query: 510 VICEFPFKELARYHKNHGKEGTIVVTKVEEPSKYGVVVYD-DNGQIESFIEKPQEFISNK 686
VIC+FPFK++ +HKNHGKEGTI VTKVEEPSKYGVVV+D D G+I+ F+EKPQE++ NK
Sbjct: 110 VICDFPFKQMVEFHKNHGKEGTIAVTKVEEPSKYGVVVFDQDKGKIDDFVEKPQEYVGNK 169
Query: 687 INXGMYLLNPSVLSRL 734
IN G+Y+ + +L R+
Sbjct: 170 INAGLYIFSSKILDRI 185
Score = 101 bits (243), Expect = 4e-22
Identities = 48/72 (66%), Positives = 59/72 (81%)
Frame = +1
Query: 256 VEFANKPILMHQIEALVEAGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHETEPLG 435
VEFANKP+++HQ+EAL E GV V+LAVSYRAE++E+E+T +LGV L FS E EPLG
Sbjct: 26 VEFANKPMMLHQMEALAEVGVDTVVLAVSYRAEQLEQEMTVHADRLGVKLIFSLEEEPLG 85
Query: 436 TAGPLALARELL 471
TAGPLALAR+ L
Sbjct: 86 TAGPLALARKHL 97
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/24 (83%), Positives = 24/24 (100%)
Frame = +2
Query: 182 IRALILVGGYGTRLRPLTLSRPKP 253
++ALILVGGYGTRLRPLTL++PKP
Sbjct: 1 MKALILVGGYGTRLRPLTLTQPKP 24
>AC006780-7|AAF60648.1| 394|Caenorhabditis elegans Hypothetical
protein Y47D9A.1b protein.
Length = 394
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +3
Query: 489 ILCIELCVICEFPFKEL-ARYHKNHGKEGTIVVTKV--EEPSKYGVVVYDDNGQIESFIE 659
+ I V + P +++ A+ G ++ T+ ++ +G VV D G++ +++
Sbjct: 103 VFVINADVCGDLPIEDMGAKLDSLSGSSMLMLTTEATRQQSINFGSVVTDSEGRVIHYVD 162
Query: 660 KPQEFISNKINXGMYLLNPSVLSRLD 737
KP F+S I+ G+YL+ V+ +LD
Sbjct: 163 KPTTFVSTNISCGVYLIKAEVIRQLD 188
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 265 ANKPILMHQIEALVE-AGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHETEPLGTA 441
A P++ H I+ L + +G+++++L + ++ ++ VS+ + E PLGTA
Sbjct: 26 AGVPLIEHHIDQLCQLSGLSEILLLGFFPSDVFTDFISRCQQTYRVSIKYLEEPNPLGTA 85
Query: 442 GPL 450
G L
Sbjct: 86 GGL 88
>AC006780-6|AAF60647.1| 401|Caenorhabditis elegans Hypothetical
protein Y47D9A.1a protein.
Length = 401
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +3
Query: 489 ILCIELCVICEFPFKEL-ARYHKNHGKEGTIVVTKV--EEPSKYGVVVYDDNGQIESFIE 659
+ I V + P +++ A+ G ++ T+ ++ +G VV D G++ +++
Sbjct: 110 VFVINADVCGDLPIEDMGAKLDSLSGSSMLMLTTEATRQQSINFGSVVTDSEGRVIHYVD 169
Query: 660 KPQEFISNKINXGMYLLNPSVLSRLD 737
KP F+S I+ G+YL+ V+ +LD
Sbjct: 170 KPTTFVSTNISCGVYLIKAEVIRQLD 195
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 265 ANKPILMHQIEALVE-AGVTQVILAVSYRAEEMEKELTEQVSKLGVSLTFSHETEPLGTA 441
A P++ H I+ L + +G+++++L + ++ ++ VS+ + E PLGTA
Sbjct: 33 AGVPLIEHHIDQLCQLSGLSEILLLGFFPSDVFTDFISRCQQTYRVSIKYLEEPNPLGTA 92
Query: 442 GPL 450
G L
Sbjct: 93 GGL 95
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Frame = +2
Query: 185 RALILVGG--YGTRLRPLTLSRPKP 253
+A++LVGG GTR RPL+L PKP
Sbjct: 4 KAVVLVGGPQKGTRFRPLSLQLPKP 28
>Z48009-7|CAA88083.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.10 protein.
Length = 329
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 674 KFLWFFYKTFYLTIIIINNHTIFGWLFYFCNHYCTFLPMILVI 546
+FLW F +F + I+ I I FYF +C +P I ++
Sbjct: 245 QFLWMFMYSFGILILRIIREDILPSTFYFWIAWCYTMPFIALM 287
>AF016664-9|AAB66065.2| 320|Caenorhabditis elegans Serpentine
receptor, class i protein71 protein.
Length = 320
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 659 FYKTFYLTIIIINNHTIFGWLFYFCNHYCTFLPMILVISCKF 534
F K I+ H + L YFC C F P++L S ++
Sbjct: 113 FGKKHQAIAYILKIHLVHDVLLYFCYFLCIFAPVVLCASMQY 154
>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical
protein ZK897.1 protein.
Length = 1396
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = +2
Query: 8 QNLCLRTYIHTPLETNLAECAY*YL--KNFCISWTGKRSISVE*IQYQFKMCGTDKKLEE 181
QNL +R I NL C Y Y +N W + V+ QY F +C +K +
Sbjct: 609 QNLKIRIAIRVEKPPNLKYCGYCYCIGRNAWKKWKKRFFCLVQVSQYAFAVCSFRQKKAD 668
Query: 182 IRALILVGGY 211
I + G+
Sbjct: 669 PTEFIQLDGF 678
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,763,292
Number of Sequences: 27780
Number of extensions: 310570
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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