Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30735.Seq
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    88   8e-19
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    88   8e-19
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   3.8  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   5.0  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   6.6  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   8.8  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 88.2 bits (209), Expect = 8e-19
 Identities = 56/148 (37%), Positives = 71/148 (47%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLGPKIGPXGLSPKKVGDDIAKATRTGRVSRSLC 282
           MPPKFDPNE+K + +R VGGEV   S+L PKIGP GLSPKKVG+DIAKAT+  +  R   
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 283 S*QFKTDKXXXXXXXXXXXXXXXXXXXXXVNVKSRKIXKHQGNIXP*RCIGHCEDS*ETD 462
               +  +                      + K  K   H GN+     I     +    
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEII-EVARTMRFK 119

Query: 463 SMGPGTFLAQ*KRFFGTAQSVGCTVEGQ 546
           S+         K   GTA SVGCTV+G+
Sbjct: 120 SLAK-ELSGTVKEILGTAFSVGCTVDGK 146



 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 44/85 (51%), Positives = 59/85 (69%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAXLIIXALKEPPRERKKQKNXXTPREHXPLKMY 431
           KDWKGL++TV+LT+QNRQA ++VVPSA+ L+I ALKEP R+RKK KN      +  L   
Sbjct: 51  KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKN-VAHSGNVSLDEI 109

Query: 432 RALRRFMRNRFNGPRYFSGSVKEIL 506
             + R MR + +  +  SG+VKEIL
Sbjct: 110 IEVARTMRFK-SLAKELSGTVKEIL 133


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 88.2 bits (209), Expect = 8e-19
 Identities = 56/148 (37%), Positives = 71/148 (47%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLGPKIGPXGLSPKKVGDDIAKATRTGRVSRSLC 282
           MPPKFDPNE+K + +R VGGEV   S+L PKIGP GLSPKKVG+DIAKAT+  +  R   
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 283 S*QFKTDKXXXXXXXXXXXXXXXXXXXXXVNVKSRKIXKHQGNIXP*RCIGHCEDS*ETD 462
               +  +                      + K  K   H GN+     I     +    
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEII-EVARTMRFK 119

Query: 463 SMGPGTFLAQ*KRFFGTAQSVGCTVEGQ 546
           S+         K   GTA SVGCTV+G+
Sbjct: 120 SLAK-ELSGTVKEILGTAFSVGCTVDGK 146



 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 44/85 (51%), Positives = 59/85 (69%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAXLIIXALKEPPRERKKQKNXXTPREHXPLKMY 431
           KDWKGL++TV+LT+QNRQA ++VVPSA+ L+I ALKEP R+RKK KN      +  L   
Sbjct: 51  KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKN-VAHSGNVSLDEI 109

Query: 432 RALRRFMRNRFNGPRYFSGSVKEIL 506
             + R MR + +  +  SG+VKEIL
Sbjct: 110 IEVARTMRFK-SLAKELSGTVKEIL 133


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 577 VDVINKIMWRPALPQYIQLTVLCQRISFT 491
           V ++ K++W   LP  ++  V+C   S T
Sbjct: 86  VQLLQKLLWDDGLPALVERKVICTLASLT 114


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -2

Query: 572 CHQ*DHVAA-CPSTVHPTDCAVPKNLFY*ARKVPGPIESVSHESSQCPIHLQGXMFPWC 399
           C   +H+A  C    HP+D +   +L       P  +  V HES    + L G +  WC
Sbjct: 568 CGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDPPSV--VGHESGWGCVQLDGKIVGWC 624


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 485 RKVPGPIESVSHESSQCP 432
           RKVP P+E++ H  S+ P
Sbjct: 330 RKVPAPLENIFHIGSKTP 347


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 182 DDVAPTSPPTHRKFTILI 129
           D++A T PP HRK  IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,667
Number of Sequences: 5004
Number of extensions: 49796
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)