Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30735.Seq
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                         87   1e-17
02_05_0416 + 28791512-28792012                                         83   2e-16
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424...    30   1.3  
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470...    28   6.8  
03_06_0462 + 34113877-34114463,34117294-34117466,34118049-341182...    27   9.0  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 47/85 (55%), Positives = 61/85 (71%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAXLIIXALKEPPRERKKQKNXXTPREHXPLKMY 431
           KDWKGL++TV+LTVQNRQA+++VVPSAA L+I ALKEP R+RKK KN      +  L   
Sbjct: 52  KDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKN-IKHSGNISLDDV 110

Query: 432 RALRRFMRNRFNGPRYFSGSVKEIL 506
             + R MRNR +  +  +G+VKEIL
Sbjct: 111 IEIARIMRNR-SMAKEMAGTVKEIL 134



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 55/149 (36%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLGPKIGPXGLSPKKVGDDIAKAT-RTGRVSRSL 279
           MPPK DP ++  V +R  GGEVGA SSL PKIGP GLSPKK+G+DIAK T +  +  R  
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 280 CS*QFKTDKXXXXXXXXXXXXXXXXXXXXXVNVKSRKIXKHQGNIXP*RCIGHCEDS*ET 459
                +  +                      + K  K  KH GNI     I         
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIM-RN 119

Query: 460 DSMGPGTFLAQ*KRFFGTAQSVGCTVEGQ 546
            SM         K   GT  SVGCTV+G+
Sbjct: 120 RSMAK-EMAGTVKEILGTCVSVGCTVDGK 147


>02_05_0416 + 28791512-28792012
          Length = 166

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 46/85 (54%), Positives = 60/85 (70%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAXLIIXALKEPPRERKKQKNXXTPREHXPLKMY 431
           KDWKGL++TV+LTVQNRQA+++VVPSAA L+I ALKEP R+RKK KN      +  L   
Sbjct: 52  KDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKN-IKHSGNISLDDV 110

Query: 432 RALRRFMRNRFNGPRYFSGSVKEIL 506
             + R MR R +  +  +G+VKEIL
Sbjct: 111 IEIARVMRPR-SMAKEMAGTVKEIL 134



 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 55/149 (36%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLGPKIGPXGLSPKKVGDDIAKAT-RTGRVSRSL 279
           MPPK DP ++  V +R  GGEVGA SSL PKIGP GLSPKK+G+DIAK T +  +  R  
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 280 CS*QFKTDKXXXXXXXXXXXXXXXXXXXXXVNVKSRKIXKHQGNIXP*RCIGHCEDS*ET 459
                +  +                      + K  K  KH GNI     I         
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVM-RP 119

Query: 460 DSMGPGTFLAQ*KRFFGTAQSVGCTVEGQ 546
            SM         K   GT  SVGCTV+G+
Sbjct: 120 RSMAK-EMAGTVKEILGTCVSVGCTVDGK 147


>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
            34543642-34543731,34544324-34544390,34544483-34544676,
            34544770-34545510,34545596-34545661,34545783-34545908,
            34545978-34546073,34546153-34546521,34546602-34546724,
            34546802-34546906,34547394-34547531,34547665-34547760,
            34548018-34548275
          Length = 1311

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 256  SLWPWQCHHPPFXETDXEDRF*GPKMMWHRLPRRHIA 146
            S+W   C H P+ E D E R  GP      L R  I+
Sbjct: 1181 SMWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217


>06_03_1069 -
           27345207-27345488,27345746-27346078,27346252-27347041,
           27347153-27347351,27347522-27347667,27347823-27348094,
           27348161-27348262,27348351-27348470,27348576-27348729,
           27348986-27349114,27349554-27349900
          Length = 957

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 120 VKLRGHFVDYLVQLYTIITLNPNGWVWIPQ 31
           V LR H    L  L  +   +P  W+WI Q
Sbjct: 81  VSLRSHLASVLQSLSQVRPRSPASWIWISQ 110


>03_06_0462 +
           34113877-34114463,34117294-34117466,34118049-34118233,
           34118865-34118957
          Length = 345

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 260 PVLVALAMSSPTFXGDRPXGPILGPKDDVAPTS 162
           P ++ L  S+P   G  P  P  GP+D++ P S
Sbjct: 7   PHVIKLHDSAPALLGRAPMPPPPGPRDELPPPS 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,412,867
Number of Sequences: 37544
Number of extensions: 351835
Number of successful extensions: 814
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)