Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30735.Seq
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   6e-22
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.32 
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_49666| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)                     29   4.0  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score =  101 bits (241), Expect = 6e-22
 Identities = 64/149 (42%), Positives = 75/149 (50%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLGPKIGPXGLSPKKVGDDIAKATRTGRVSRSLC 282
           MPPKFDPNEI+ V LRC GGEVGAT+SL PKIGP GLSPKKVGDDIAKAT+  +  +   
Sbjct: 1   MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITV 60

Query: 283 S*QFKTDKXXXXXXXXXXXXXXXXXXXXXVNVKSRKIXKHQGNIXP*RCIGHCEDS*ETD 462
               +  +                      + K  K  KH GNI     + +        
Sbjct: 61  CLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITL-DDVTNVAKVMRPR 119

Query: 463 SMGPGTFLAQ*KRFFGTAQSVGCTVEGQA 549
           SM         K   GT QSVGCTV+G A
Sbjct: 120 SMA-RHLSGTVKEILGTCQSVGCTVDGMA 147



 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 48/85 (56%), Positives = 61/85 (71%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAXLIIXALKEPPRERKKQKNXXTPREHXPLKMY 431
           +DWKGLKITV LT+QNRQA+++VVPSA+ LII ALKEPPR+RKK KN      +  L   
Sbjct: 51  QDWKGLKITVCLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKN-IKHNGNITLDDV 109

Query: 432 RALRRFMRNRFNGPRYFSGSVKEIL 506
             + + MR R +  R+ SG+VKEIL
Sbjct: 110 TNVAKVMRPR-SMARHLSGTVKEIL 133


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 23/61 (37%), Positives = 28/61 (45%)
 Frame = -2

Query: 350  SDDKXCCRGNNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTFXGDRPXGPILGPKDDVA 171
            SD+K C R       LS L      ++ TL  L      S TF   +P GP+ G K DVA
Sbjct: 924  SDEKRCIRAF-----LSSLRNPSDDEVLTLMALPIFEAISGTFTAVQPDGPLRGEKLDVA 978

Query: 170  P 168
            P
Sbjct: 979  P 979


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = -2

Query: 353 GSDDKXCC-----RGNNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTFXGDR 210
           GSD+K CC      G  + LG+  +   +HSD++  P+L  LA     F  +R
Sbjct: 116 GSDNKLCCFFLGQDGEKAMLGIVYVLTHVHSDIQFCPLLPVLAALFLHFMDER 168


>SB_49666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 497 RDSLAQHSQLDVLWKGRPPHDLIDDI 574
           R+ + + +  DV+W   P HD+IDD+
Sbjct: 18  RNIIRRSNLADVMWVSPPRHDVIDDV 43


>SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)
          Length = 1165

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 556  MWRPALPQYIQLT-VLCQRISFTEPEKYR 473
            MWRP + Q   L   LCQR+  T  ++YR
Sbjct: 1026 MWRPYIKQLSYLLGFLCQRLVVTSSQRYR 1054


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,392,281
Number of Sequences: 59808
Number of extensions: 385364
Number of successful extensions: 825
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)