Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30735.Seq
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   104   4e-23
Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical p...    32   0.38 
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.      29   2.7  
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w...    29   2.7  
AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    27   8.1  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  104 bits (250), Expect = 4e-23
 Identities = 63/148 (42%), Positives = 76/148 (51%)
 Frame = +1

Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLGPKIGPXGLSPKKVGDDIAKATRTGRVSRSLC 282
           MPPKFDP EIKIV LRCVGGEVGATS+L PK+GP GLSPKK+G+DIAKAT+  +  +  C
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60

Query: 283 S*QFKTDKXXXXXXXXXXXXXXXXXXXXXVNVKSRKIXKHQGNIXP*RCIGHCEDS*ETD 462
               +                         + K  K  KH G++     I          
Sbjct: 61  KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIM-RPR 119

Query: 463 SMGPGTFLAQ*KRFFGTAQSVGCTVEGQ 546
           SM         K   GTAQSVGCT++GQ
Sbjct: 120 SMAK-KLEGTVKEILGTAQSVGCTIDGQ 146



 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 47/101 (46%), Positives = 62/101 (61%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAXLIIXALKEPPRERKKQKNXXTPREHXPLKMY 431
           +DWKGLK+T +LT+QNR A+I VVPSAA LI+  LKEPPR+RKK KN     +   +   
Sbjct: 51  QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGD-LTVDTI 109

Query: 432 RALRRFMRNRFNGPRYFSGSVKEILWHSTVSWMYCGRAGRH 554
             + R MR R +  +   G+VKEIL   T   + C   G+H
Sbjct: 110 IKIARIMRPR-SMAKKLEGTVKEIL--GTAQSVGCTIDGQH 147


>Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical
           protein Y49E10.4 protein.
          Length = 436

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 117 KLRGHFVDYLVQLYTIITLNPNGWVWIPQGYRLNVQR 7
           K R   +D L +L TI      GWVW+  G + NVQR
Sbjct: 305 KCRKQKIDMLNELATIFKKRSFGWVWMEGGAQENVQR 341


>Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical
           protein JC8.3c protein.
          Length = 50

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 496 KRFFGTAQSVGCTVEGQ 546
           K   GTAQSVGCT++GQ
Sbjct: 15  KEILGTAQSVGCTIDGQ 31


>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
          Length = 1142

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 604 IYHQWSNSAVDVINKIMWRPALPQYIQLTVLCQRISFTEPE 482
           +Y+QW++SA   + ++       + + L +L Q IS+ EPE
Sbjct: 740 VYNQWAHSAAVYLAELYSFELCDEDLVLKILYQLISYPEPE 780


>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 3 protein.
          Length = 1142

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 604 IYHQWSNSAVDVINKIMWRPALPQYIQLTVLCQRISFTEPE 482
           +Y+QW++SA   + ++       + + L +L Q IS+ EPE
Sbjct: 740 VYNQWAHSAAVYLAELYSFELCDEDLVLKILYQLISYPEPE 780


>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = -1

Query: 129 FIWVKLRGHFVDYLVQLYTIITLNPNGWVWI 37
           F+W    GH + Y  +    +  +P  W W+
Sbjct: 131 FVWSMAIGHVIPYFWRETCYVAYDPVSWTWV 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,316,049
Number of Sequences: 27780
Number of extensions: 287176
Number of successful extensions: 811
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)