Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30735.Seq
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.45 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.3  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 81  LYTIITLNPNGWVWIPQGY 25
           L TI+   P GW+W  QG+
Sbjct: 154 LNTIVYCVPAGWIWGDQGF 172


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 15  RSGGSLAESKPIHLDLTLL 71
           +SG  L E++PI+ +LT++
Sbjct: 200 KSGDVLVETEPIYYNLTMV 218


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 126 IWVKLRGHFVDYLVQLYTIITLNPN-GWVWIPQGYRL 19
           +W K   +   Y+  LYT +   P+  ++ +P  Y +
Sbjct: 129 LWAKNNINEAQYIYSLYTAVITRPDTKFIQLPPLYEM 165


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 126 IWVKLRGHFVDYLVQLYTIITLNPN-GWVWIPQGYRL 19
           +W K   +   Y+  LYT +   P+  ++ +P  Y +
Sbjct: 129 LWAKNNINEAQYIYSLYTAVITRPDTKFIQLPPLYEM 165


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 351 ALKEPPRERKKQKNXXTPREH 413
           ++KE   E+KK K   +P E+
Sbjct: 533 SMKETEEEKKKTKQSLSPSEN 553


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 45  VWIPQGYRL 19
           +W+PQ YRL
Sbjct: 131 IWVPQKYRL 139


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 209 PXGPILGPKDDVAPTSPPTHRKFTILIS 126
           P  P  GP     P +PP+     ++IS
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPSQMMIS 66


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 45  VWIPQGYRL 19
           +W+PQ YRL
Sbjct: 131 IWVPQKYRL 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,790
Number of Sequences: 438
Number of extensions: 3793
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)