Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30735.Seq
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 81 8e-16
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 81 8e-16
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 80 1e-15
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 28 4.3
At2g39450.1 68415.m04842 cation efflux family protein contains c... 28 4.3
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra... 27 7.5
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra... 27 7.5
At5g62170.1 68418.m07804 expressed protein various predicted pro... 27 10.0
At5g29020.1 68418.m03592 hypothetical protein 27 10.0
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 80.6 bits (190), Expect = 8e-16
Identities = 44/85 (51%), Positives = 58/85 (68%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAXLIIXALKEPPRERKKQKNXXTPREHXPLKMY 431
K+WKGL++TV+LTVQNRQA++ VVPSAA L+I ALKEP R+RKK KN +
Sbjct: 52 KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKN-IKHNGNISFDDV 110
Query: 432 RALRRFMRNRFNGPRYFSGSVKEIL 506
+ R MR R + + SG+V+EIL
Sbjct: 111 TEIARIMRPR-SIAKELSGTVREIL 134
Score = 76.2 bits (179), Expect = 2e-14
Identities = 34/50 (68%), Positives = 40/50 (80%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLGPKIGPXGLSPKKVGDDIAKAT 252
MPPK DP++I V +R GGEVGA SSL PKIGP GL+PKK+G+DIAK T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 80.6 bits (190), Expect = 8e-16
Identities = 44/85 (51%), Positives = 58/85 (68%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAXLIIXALKEPPRERKKQKNXXTPREHXPLKMY 431
K+WKGL++TV+LTVQNRQA++ VVPSAA L+I ALKEP R+RKK KN +
Sbjct: 52 KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKN-IKHNGNISFDDV 110
Query: 432 RALRRFMRNRFNGPRYFSGSVKEIL 506
+ R MR R + + SG+V+EIL
Sbjct: 111 TEIARIMRPR-SIAKELSGTVREIL 134
Score = 76.2 bits (179), Expect = 2e-14
Identities = 34/50 (68%), Positives = 40/50 (80%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLGPKIGPXGLSPKKVGDDIAKAT 252
MPPK DP++I V +R GGEVGA SSL PKIGP GL+PKK+G+DIAK T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 79.8 bits (188), Expect = 1e-15
Identities = 44/85 (51%), Positives = 58/85 (68%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAXLIIXALKEPPRERKKQKNXXTPREHXPLKMY 431
K+WKGL++TV+LTVQNRQA++ VVPSAA L+I ALKEP R+RKK KN +
Sbjct: 52 KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKN-IKHNGNISFDDV 110
Query: 432 RALRRFMRNRFNGPRYFSGSVKEIL 506
+ + MR R + + SG+VKEIL
Sbjct: 111 IEIAKIMRPR-SIAKELSGTVKEIL 134
Score = 76.2 bits (179), Expect = 2e-14
Identities = 34/50 (68%), Positives = 40/50 (80%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLGPKIGPXGLSPKKVGDDIAKAT 252
MPPK DP++I V +R GGEVGA SSL PKIGP GL+PKK+G+DIAK T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -3
Query: 583 SAVDVINKIMWRPALPQYIQLTVLCQRISFTEPEKYRGPLNLFLMNLRN 437
+AVD I +++W P+ L++ C ISFT K P N F + L N
Sbjct: 38 AAVDAITELVWSPS----NGLSLRCADISFTGKAKLLSP-NFFDIGLTN 81
>At2g39450.1 68415.m04842 cation efflux family protein contains
cation efflux family protein domain, Pfam:PF01545
Length = 394
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -3
Query: 592 WSNSAVDVINKIMWRPALPQYIQ-LTVLC 509
WS + ++ +N ++ + A P+Y+Q LT LC
Sbjct: 288 WSMTVLENVNSLVGKSARPEYLQKLTYLC 316
>At2g37410.2 68415.m04588 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 367 GGSLRAXMIRXAAEGTTAIWACLF*TVSCTVI-LRPFQSLW 248
GG+ M G+ A+W LF T CT++ LR + W
Sbjct: 50 GGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPW 90
>At2g37410.1 68415.m04587 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 367 GGSLRAXMIRXAAEGTTAIWACLF*TVSCTVI-LRPFQSLW 248
GG+ M G+ A+W LF T CT++ LR + W
Sbjct: 50 GGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPW 90
>At5g62170.1 68418.m07804 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 703
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 274 ILRPFQSLWPWQCHHP 227
IL+P +L PW CH+P
Sbjct: 564 ILKPHINLKPWVCHYP 579
>At5g29020.1 68418.m03592 hypothetical protein
Length = 847
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 287 QLHSDLETLPVLVALAMSS--PTFXGDRPXGPILGPKDDVAPTSPPTHR 147
++H+DLE L L+ ++ S P+ + P D + +S HR
Sbjct: 238 EIHADLENLRFLILISSDSFEPSMSSSHSNASLSSPSDLLGDSSESNHR 286
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,666,137
Number of Sequences: 28952
Number of extensions: 276165
Number of successful extensions: 648
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -