Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30733.Seq
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 136 3e-33
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 52 7e-08
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 52 7e-08
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 52 1e-07
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 50 4e-07
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 50 5e-07
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 44 3e-05
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 44 3e-05
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 42 1e-04
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 42 1e-04
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 41 2e-04
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 40 4e-04
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 36 0.007
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 31 0.14
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 30 0.33
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 30 0.44
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 1.0
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 1.0
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 1.8
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 1.8
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 4.1
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 26 5.4
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.4
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 9.5
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 25 9.5
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 136 bits (330), Expect = 3e-33
Identities = 62/96 (64%), Positives = 74/96 (77%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRG MR VEFKVV+ P F IV+ DT+IH +GEPI RE+EE +L VGYDDIGGCR+Q+
Sbjct: 174 VRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVGYDDIGGCRRQM 233
Query: 690 AQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
AQI+E+VELPLRHP LFK+IG+KP GP GT
Sbjct: 234 AQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGT 269
Score = 95.9 bits (228), Expect = 6e-21
Identities = 43/100 (43%), Positives = 63/100 (63%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
+ +G+ + IVL+D+ D R+ D+V+I PCP +KY +R+ +L
Sbjct: 78 VVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVL 137
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGA 522
P+ D+VEGLTG+LF+VYLKPYF+EAYRPI + D F G+
Sbjct: 138 PLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGS 177
Score = 86.6 bits (205), Expect = 4e-18
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = +2
Query: 53 NKMADNKSPDDLSTAIXRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 232
N D S +D +TAI R+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++K
Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80
Query: 233 GKRRKETV 256
GKRRK+TV
Sbjct: 81 GKRRKDTV 88
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 52.4 bits (120), Expect = 7e-08
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
Y+ +GG KQ+ +IKE++ELP++HP LF+++G+ GP GT
Sbjct: 144 YEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGT 190
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 52.4 bits (120), Expect = 7e-08
Identities = 25/65 (38%), Positives = 35/65 (53%)
Frame = +3
Query: 603 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCM 782
D +P+ + + Y DIGG Q+ +IKE VELPL HP L++ +G+KP
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILY 231
Query: 783 GPLGT 797
G GT
Sbjct: 232 GAPGT 236
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 52.0 bits (119), Expect = 1e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
V Y D+GGC++Q+ +++E+VELPL P F +G+ P GP GT
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGT 224
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 50.0 bits (114), Expect = 4e-07
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = +3
Query: 645 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
+AV + IGG + Q+AQI+++VELP ++P LFK + P GP GT
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGT 324
Score = 39.5 bits (88), Expect = 5e-04
Identities = 23/58 (39%), Positives = 30/58 (51%)
Frame = +3
Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
RE E+ N V + DIGG + ++KE VE PL H F +GV+P GP G
Sbjct: 536 REFMMESPN-VHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPG 592
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 49.6 bits (113), Expect = 5e-07
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
+ + +GG +Q+ +++E++ELPL++P LF +G+KP GP GT
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGT 177
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
V Y D+GG Q +++E VELPL L++ IG+ P GP GT
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGT 179
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 44.0 bits (99), Expect = 3e-05
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
Y DIGG KQ+ ++ E + LP++ F+ +GVKP GP GT
Sbjct: 184 YSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGT 230
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +3
Query: 645 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
+++ ++ +GG + Q+KEMV LPL +P +F+ ++P GP GT
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGT 311
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
V +DDIGG + +++ ++LPL+ P LF G+KP + GP GT
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGT 699
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +3
Query: 597 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFS 776
H D + I+ + + ++ IGG + Q+KEMV LPL +P +F + + P
Sbjct: 351 HIDEKTIRSTDPFANRENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVL 410
Query: 777 CMGPLGT 797
GP GT
Sbjct: 411 FHGPPGT 417
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
K E E + + DIGG + ++ E+V +P++HP +++ G+ P GP G
Sbjct: 160 KAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPG 218
Score = 31.9 bits (69), Expect = 0.11
Identities = 12/62 (19%), Positives = 30/62 (48%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGP 788
+P + E + V +++IG + +++ + P++ P L++++G+ GP
Sbjct: 475 QPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGP 534
Query: 789 LG 794
G
Sbjct: 535 PG 536
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 35.9 bits (79), Expect = 0.007
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
V +DDI G +KE V LP++ P LF + G KP + GP GT
Sbjct: 126 VRWDDIAGLENAKEALKETVLLPIKLPQLF-SHGRKPWSGILLYGPPGT 173
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 31.5 bits (68), Expect = 0.14
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIG 752
V +DDIGG + + Q+ + V PL++P +F G
Sbjct: 86 VSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHG 119
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 30.3 bits (65), Expect = 0.33
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 548 DHFELDGAHAPAD-LKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTRF 384
DH L +H PA+ LK I A++ G T +PV P+ ++G + TRF
Sbjct: 355 DHCYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRF 410
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 29.9 bits (64), Expect = 0.44
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
V +DDI G +KE V P P LF+ + +P GP GT
Sbjct: 456 VHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGT 503
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -2
Query: 421 QLNHQLAVCGLV---FHISLKDTERWI 350
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -2
Query: 421 QLNHQLAVCGLV---FHISLKDTERWI 350
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 78 LMIYRPRSXVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 191
L + R + DP ++ + Q + T+SWH FH +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 391 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 281
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 576 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 665
V PD + D E I+REEE++A A ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 391 LVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLRARCNGF 248
L FH ++ D W PH+ + G F H + +G + R GF
Sbjct: 177 LGFHPNVGDYFDWYPHRPNHFGGKFDGHSRGRGAGRGGFCGRHGRGGF 224
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +2
Query: 50 LNKMADNKSPDDLSTAIXRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 208
L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTK-SKRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +2
Query: 137 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
E+AV D+N+ ++L+ + + RGD ++ G ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 50 LNKMADNKSPDDLSTAIXRRKDRPNRLIVEEAVSD 154
LNK+ D+ D + I R++D PNRL++ A+S+
Sbjct: 227 LNKI-DHPDADANISKIARKED-PNRLVLASAISE 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,291,332
Number of Sequences: 5004
Number of extensions: 65806
Number of successful extensions: 203
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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