Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30733.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        135   3e-32
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   6e-09
SB_9909| Best HMM Match : AAA (HMM E-Value=0)                          54   1e-07
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-07
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   4e-07
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)                51   9e-07
SB_33442| Best HMM Match : AAA (HMM E-Value=0)                         45   8e-05
SB_48561| Best HMM Match : AAA (HMM E-Value=0)                         42   6e-04
SB_49367| Best HMM Match : AAA (HMM E-Value=0)                         40   0.003
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_19460| Best HMM Match : AAA (HMM E-Value=0)                         34   0.12 
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_33412| Best HMM Match : ANF_receptor (HMM E-Value=0)                31   1.4  
SB_32255| Best HMM Match : Spectrin (HMM E-Value=0.23)                 28   7.6  
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)                    28   7.6  
SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  135 bits (327), Expect = 3e-32
 Identities = 59/65 (90%), Positives = 64/65 (98%)
 Frame = +3

Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
           VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHC+GEP+KREEEEE+LN VGYDDIGGCRKQL
Sbjct: 108 VRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKREEEEESLNEVGYDDIGGCRKQL 167

Query: 690 AQIKE 704
           AQIKE
Sbjct: 168 AQIKE 172



 Score = 99.1 bits (236), Expect = 4e-21
 Identities = 45/59 (76%), Positives = 55/59 (93%)
 Frame = +2

Query: 80  DDLSTAIXRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETV 256
           D+L+TAI + K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TV
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTV 63



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = +3

Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
           RE   E  N V +DDIGG      +++E+V+ P+ HP  F   G+ P       GP G
Sbjct: 298 RETVVEVPN-VSWDDIGGLEGVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 354



 Score = 31.9 bits (69), Expect = 0.62
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 351
           L +G+  +   CIVLSDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95


>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 802

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 29/69 (42%), Positives = 39/69 (56%)
 Frame = +3

Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAA 770
           VIH  G  IK++ E  A   V +  IGG + Q+  ++EM+E+PL +P LF A GV P   
Sbjct: 235 VIHPFGSVIKKDSE--AKKGVSFQSIGGLKTQIQAVREMIEMPLTNPELFTAYGVPPPRG 292

Query: 771 FSCMGPLGT 797
               GP GT
Sbjct: 293 ILLYGPSGT 301



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
           V + D+GG      ++KE VE PL+HP  F+ +G++P       GP G
Sbjct: 534 VHWSDVGGNEMIKRKLKEAVEWPLKHPEAFQRLGIRPPRGILMYGPPG 581


>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
          Length = 400

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
           V Y DIGGC++Q+ +++E+VE PL HP  F  +G++P       GP GT
Sbjct: 81  VTYSDIGGCKEQIDKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGT 129


>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 27/69 (39%), Positives = 37/69 (53%)
 Frame = +3

Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAA 770
           V+  D +P+    + E      Y DIGG   Q+ +IKE VELPL HP L++ +G+KP   
Sbjct: 357 VLSDDADPMVTVMKLEKAPQESYADIGGLDTQIQEIKESVELPLTHPELYEEMGIKPPKG 416

Query: 771 FSCMGPLGT 797
               G  GT
Sbjct: 417 VILYGQPGT 425


>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 21/47 (44%), Positives = 32/47 (68%)
 Frame = +3

Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
           Y+ +GG  KQ+ +IKE++ELP++HP LF+A+G+         GP GT
Sbjct: 176 YEMVGGLDKQIKEIKEVIELPVKHPELFEALGIDQPKGVLLYGPPGT 222


>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
          Length = 779

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 20/62 (32%), Positives = 35/62 (56%)
 Frame = +3

Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGP 788
           +P+      E    + Y D+GG  +Q+ +++E++ELPL +P LF+ +G+ P       GP
Sbjct: 118 DPLVYNMSHEDPGNISYSDVGGLSEQIRELREVIELPLTNPELFQRVGIAPPKGCLLFGP 177

Query: 789 LG 794
            G
Sbjct: 178 PG 179


>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
          Length = 369

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 25/54 (46%), Positives = 30/54 (55%)
 Frame = +3

Query: 633 EEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
           EE  N V Y +IGG   Q  +I+E VELPL H  L+K IG+ P       GP G
Sbjct: 156 EEKPN-VSYAEIGGMDIQKQEIREAVELPLTHFELYKQIGIDPPRGVLLYGPPG 208


>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
          Length = 2021

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 651  VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
            V +D +GG  KQ+  +KEM+  PL +P +F    + P       GP GT
Sbjct: 881  VKFDSVGGLNKQIQALKEMILFPLVYPEVFDKFKITPPRGVLFFGPPGT 929


>SB_49367| Best HMM Match : AAA (HMM E-Value=0)
          Length = 976

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +3

Query: 645 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
           ++V + DIGGC   L Q+ +++ + + HP +F  +GV P   F   GP G
Sbjct: 672 SSVKFADIGGCSNTLEQVGKLL-VHMCHPEVFTTLGVTPTTGFLLHGPPG 720


>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 642 LNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
           L    +DD+GG       +++ +E PL HP  F  +G++        GP G
Sbjct: 478 LQPTRWDDVGGLEGVKQALRQAIEWPLLHPEAFARMGLRRPRGVLLYGPPG 528


>SB_19460| Best HMM Match : AAA (HMM E-Value=0)
          Length = 340

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 642 LNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
           L    +DD+GG       +++ +E PL HP  F  +G++        GP G
Sbjct: 7   LQPTRWDDVGGLEGVKQALRQAIEWPLLHPEAFARMGLRRPRGVLLYGPPG 57


>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
           + + D+GG      +I + ++LPL HP LF A G++  +     GP GT
Sbjct: 809 ISWKDVGGLDSVKEEILDTIQLPLLHPELF-AAGLR-RSGVLLYGPPGT 855


>SB_33412| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 852

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +3

Query: 708 VELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
           V+LP+ HPSL +A+G+   A +SC+G L T
Sbjct: 547 VKLPVVHPSLGEAMGI-TFAVWSCLGMLVT 575


>SB_32255| Best HMM Match : Spectrin (HMM E-Value=0.23)
          Length = 172

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 713
           KREEE E L     + +  C+K+L  ++E++E
Sbjct: 63  KREEELELLLETRTEKLSECKKRLLDLEEIIE 94


>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
          Length = 847

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 713
           KREEE E L     + +  C+K+L  ++E++E
Sbjct: 664 KREEELELLLETRTEKLSECKKRLLDLEEIIE 695


>SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 603 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEM 707
           D +  + EEEEE    +G+D+ G   ++L +I+E+
Sbjct: 255 DDDETEDEEEEEEQPVMGWDEYGTSPQRLQRIREL 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,757,086
Number of Sequences: 59808
Number of extensions: 537926
Number of successful extensions: 1394
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)