Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30733.Seq
(797 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 146 1e-35
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 146 1e-35
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 146 2e-35
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 58 5e-09
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 57 1e-08
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 54 1e-07
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 53 3e-07
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 53 3e-07
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 52 4e-07
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 52 4e-07
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 48 5e-06
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 48 5e-06
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 46 3e-05
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 46 4e-05
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 42 4e-04
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 41 8e-04
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 39 0.003
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 39 0.004
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 38 0.006
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 38 0.008
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 38 0.008
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 36 0.024
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 36 0.024
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 36 0.031
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 36 0.041
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 35 0.054
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 34 0.095
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 33 0.22
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 33 0.29
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 32 0.51
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 31 0.67
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 31 0.67
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 1.2
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 31 1.2
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 30 1.5
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 30 1.5
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 30 1.5
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 30 1.5
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 30 2.0
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 28 6.2
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 28 8.3
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 146 bits (354), Expect = 1e-35
Identities = 65/96 (67%), Positives = 80/96 (83%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+KRE+EE L+ VGYDD+GG RKQ+
Sbjct: 158 VRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEER-LDEVGYDDVGGVRKQM 216
Query: 690 AQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
AQI+E+VELPLRHP LFK+IGVKP GP G+
Sbjct: 217 AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 252
Score = 117 bits (282), Expect = 8e-27
Identities = 51/99 (51%), Positives = 66/99 (66%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F G
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRG 160
Score = 91.9 bits (218), Expect = 4e-19
Identities = 41/65 (63%), Positives = 54/65 (83%)
Frame = +2
Query: 62 ADNKSPDDLSTAIXRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D+K+ D STAI RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67
Query: 242 RKETV 256
RK+TV
Sbjct: 68 RKDTV 72
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
RE E N V ++DIGG +++E V+ P+ HP F+ G+ P GP G
Sbjct: 468 RETVVEVPN-VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 524
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 146 bits (354), Expect = 1e-35
Identities = 65/96 (67%), Positives = 80/96 (83%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRGGMR++EFKV+ETDP+ +C+VAPDT I C+GEPIKRE+EE L+ VGYDD+GG RKQ+
Sbjct: 159 VRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKREDEER-LDEVGYDDVGGVRKQM 217
Query: 690 AQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
AQI+E+VELPLRHP LFK+IGVKP GP G+
Sbjct: 218 AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 253
Score = 112 bits (269), Expect = 3e-25
Identities = 47/99 (47%), Positives = 65/99 (65%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYG RVHIL
Sbjct: 63 LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
P+DD++EG++GN+F+ YLKPYF+EAYRP+ + D F G
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRG 161
Score = 82.2 bits (194), Expect = 4e-16
Identities = 39/66 (59%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Frame = +2
Query: 62 ADNK-SPDDLSTAIXRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
+D+K + D STAI +K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67
Query: 239 RRKETV 256
+RK+TV
Sbjct: 68 KRKDTV 73
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
RE E N V ++DIGG +++E V+ P+ HP F+ G+ P GP G
Sbjct: 469 RETVVEVPN-VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 525
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 146 bits (353), Expect = 2e-35
Identities = 65/96 (67%), Positives = 80/96 (83%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+KRE+EE L+ VGYDD+GG RKQ+
Sbjct: 158 VRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEER-LDDVGYDDVGGVRKQM 216
Query: 690 AQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
AQI+E+VELPLRHP LFK+IGVKP GP G+
Sbjct: 217 AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGS 252
Score = 117 bits (282), Expect = 8e-27
Identities = 51/99 (51%), Positives = 66/99 (66%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CI L+D+ C + KIRM DV+S+ CP VKYGKRVHIL
Sbjct: 62 LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F G
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRG 160
Score = 94.7 bits (225), Expect = 6e-20
Identities = 43/65 (66%), Positives = 55/65 (84%)
Frame = +2
Query: 62 ADNKSPDDLSTAIXRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D+KS D STAI RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67
Query: 242 RKETV 256
RK+TV
Sbjct: 68 RKDTV 72
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 621 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
RE E N V ++DIGG +++E V+ P+ HP F+ G+ P GP G
Sbjct: 468 RETVVEVPN-VSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 524
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 58.4 bits (135), Expect = 5e-09
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
V Y+D+GGC++Q+ +++E+VELP+ HP F +G+ P C GP GT
Sbjct: 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGT 213
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 57.2 bits (132), Expect = 1e-08
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
Y DIGGC++Q+ +I+E+VELP+ HP F +G+ P C GP G+
Sbjct: 204 YSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGS 250
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/49 (51%), Positives = 30/49 (61%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
V Y+DIGGC Q +I+E VELPL H L+K IG+ P GP GT
Sbjct: 152 VSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGT 200
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/69 (37%), Positives = 37/69 (53%)
Frame = +3
Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAA 770
++ + +P+ + E Y DIGG Q+ +IKE VELPL HP L++ IG+KP
Sbjct: 165 ILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKG 224
Query: 771 FSCMGPLGT 797
G GT
Sbjct: 225 VILYGEPGT 233
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/69 (37%), Positives = 37/69 (53%)
Frame = +3
Query: 591 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAA 770
++ + +P+ + E Y DIGG Q+ +IKE VELPL HP L++ IG+KP
Sbjct: 165 ILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKG 224
Query: 771 FSCMGPLGT 797
G GT
Sbjct: 225 VILYGEPGT 233
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
YD IGG +Q+ +IKE++ELP++HP LF+++G+ GP GT
Sbjct: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGT 206
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
YD IGG +Q+ +IKE++ELP++HP LF+++G+ GP GT
Sbjct: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGT 206
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGP 788
+P+ E + Y +GG Q+ +++E +ELPL +P LF +G+KP GP
Sbjct: 122 DPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGP 181
Query: 789 LGT 797
GT
Sbjct: 182 PGT 184
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGP 788
+P+ E + Y +GG Q+ +++E +ELPL +P LF +G+KP GP
Sbjct: 122 DPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGP 181
Query: 789 LGT 797
GT
Sbjct: 182 PGT 184
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
Y+DIGG KQ+ ++ E + LP+ H F+ +GV+P GP GT
Sbjct: 170 YNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGT 216
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 657 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
Y+DIGG KQ+ ++ E + LP+ H F+ +G++P GP GT
Sbjct: 169 YNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGT 215
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
+ +DDIGG + + +KEMV PL +P F + + P GP GT
Sbjct: 378 INFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGT 426
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
V ++D+GG + Q+ E VE P +H FK IG +P + GP G
Sbjct: 721 VNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPG 768
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +3
Query: 630 EEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
E E + D GG +K L +++ V P+ +P FK IGVKP + GP G
Sbjct: 223 EVEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPG 277
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
V +DD+GG Q + P++ P ++KA GV F GP G
Sbjct: 525 VKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPG 572
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
V + DIG + ++E+V LPLR P LFK +KP GP GT
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGT 459
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPHAAFSCMGPLGT 797
V +DDIG +KE+V LPL+ P LF K KP GP GT
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGT 1009
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPHAAFSCMGPLGT 797
V +DDIG K +KE+V LPL+ P LF K KP GP GT
Sbjct: 817 VTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPPGT 866
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
V +DD+GG + ++++ VE P++H + F +G+ P GP G
Sbjct: 283 VTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPG 330
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 663 DIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
+IGG + L ++E++ P R+P + +G+K GP GT
Sbjct: 23 EIGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGT 67
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 36.3 bits (80), Expect = 0.024
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = +3
Query: 636 EALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
E +N V + DIG + ++E+V LPLR P LF +KP GP GT
Sbjct: 514 EEIN-VTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGT 566
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 36.3 bits (80), Expect = 0.024
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = +3
Query: 636 EALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
E +N V + DIG + ++E+V LPLR P LF +KP GP GT
Sbjct: 509 EEIN-VTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGT 561
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 35.9 bits (79), Expect = 0.031
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
V +DD+GG I + V+LPL H LF + G++ + GP GT
Sbjct: 655 VKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGT 702
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 35.5 bits (78), Expect = 0.041
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPHAAFSCMGPLGT 797
V + DIG +KE+V LPL+ P LF K KP GP GT
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGT 996
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLG 794
+G++D+GG IKEM+ELP + P +F ++ + GP G
Sbjct: 841 LGWEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPG 888
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 34.3 bits (75), Expect = 0.095
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPHAAFSCMGPLGT 797
V +DDIG +KE+V LP + P LF K KP GP GT
Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGT 781
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPHAAFSCMGPLGT 797
V +DDIG + E+V LP+R P LF + ++P GP GT
Sbjct: 147 VKFDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPGT 196
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
K + + E V +DD+ G + E+VE L+ P F A+G K +GP GT
Sbjct: 213 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVLLIGPPGT 271
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 609 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGP 788
E I + E G+D + G +KE+V +PL +P F +G+ P G
Sbjct: 702 EYIGGSDSESGKAFEGWDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGH 761
Query: 789 LGT 797
GT
Sbjct: 762 PGT 764
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 31.5 bits (68), Expect = 0.67
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLF-KAIGVKPHAAFSCMGPLGT 797
V ++DIG + E+V LP+R P LF + ++P GP GT
Sbjct: 348 VKFEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGT 397
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 31.5 bits (68), Expect = 0.67
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
K + + E V +DD+ G + E+VE L+ P F A+G + +GP GT
Sbjct: 206 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGT 264
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -2
Query: 214 TTEELKLLHFGL*KCHD*VVIAD 146
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
K + +E V + D+ G + +++E+V+ L++P + A+G K +GP GT
Sbjct: 248 KSKFQEVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGT 306
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
K + +E V + D+ G + +++E+V+ L++P + A+G K +GP GT
Sbjct: 236 KSKFQEVPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGT 294
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 618 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
K + + E + ++D+ G + +E+VE L+ P F A+G K GP GT
Sbjct: 209 KAKFQMEPNTGITFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLLTGPPGT 267
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
V +DDI G + EMV PL P +FK P GP GT
Sbjct: 7 VRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCR-SPGKGLLLFGPPGT 54
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 369 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 274
RT S+ +++ HTK++ HN + L+R +I
Sbjct: 28 RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPHAAFSCMGPLGT 797
V +DD+ G + ++E V LPL P F+ I +P GP GT
Sbjct: 236 VRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGT 283
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIG--VKPHAAFSCMGPLGT 797
V + IGG + E+V LPL+ P LF A G + P GP GT
Sbjct: 84 VEFGSIGGLESIKQALYELVILPLKRPELF-AYGKLLGPQKGVLLYGPPGT 133
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 651 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIG--VKPHAAFSCMGPLGT 797
V + IGG + E+V LPL+ P LF A G + P GP GT
Sbjct: 81 VEFGSIGGLETIKQALYELVILPLKRPELF-AYGKLLGPQKGVLLYGPPGT 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,727,978
Number of Sequences: 28952
Number of extensions: 366574
Number of successful extensions: 1060
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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