Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30731.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 52   6e-07
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)                        28   8.4  

>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +1

Query: 508 LKLNKPNACIKDCTHALELNCDSAXPYKFRGRAYRLLGNLKNLPTIFCESLK 663
           +++ KPNA I+DC  A ++N DSA  YK+RGRA+  LG+ +       ++LK
Sbjct: 93  IRMKKPNAAIRDCDKAAQINPDSAQIYKWRGRAHEFLGHWEKADKDLAQALK 144



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
 Frame = +2

Query: 257 EPESD---VELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQ--- 418
           +PES+    ++D  GVI PD  DE   MGD +                            
Sbjct: 3   KPESEKGVFDIDQTGVIEPD-VDEPVPMGDDSIESPLASLVMTFWLSVTGREKSGGSDTL 61

Query: 419 -KYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
              +EAI L+T AI  NP SA LFAKR   +
Sbjct: 62  GNLEEAIKLFTDAIMKNPHSAPLFAKRASCF 92


>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQV 505
           AF +QKY+EA+ LYT A+  +  +   +  R Q+
Sbjct: 130 AFKQQKYEEAVKLYTQALNQDRTNTAFYTNRAQL 163


>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 532 CIKDCTHALELNCDSAXPYKFRGRAYRLLGN 624
           CIK+C  A+E+   +   +   G+A+  +GN
Sbjct: 283 CIKECLEAVEVGRSNRAEFALIGKAFARIGN 313


>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1981

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKR 496
           A S+  + +A+ LY+ AI+L+P + +L+  R
Sbjct: 32  ACSKGDFQKAVELYSEAIKLDPNNHVLYGNR 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,174,098
Number of Sequences: 59808
Number of extensions: 375259
Number of successful extensions: 832
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)