Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30731.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 63 2e-10
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 55 5e-08
At4g23570.2 68417.m03396 phosphatase-related low similarity to p... 38 0.006
At4g23570.1 68417.m03395 phosphatase-related low similarity to p... 38 0.006
At2g42810.1 68415.m05300 serine/threonine protein phosphatase, p... 36 0.020
At4g11260.1 68417.m01822 phosphatase-related low similarity to p... 36 0.026
At1g12270.1 68414.m01419 stress-inducible protein, putative simi... 35 0.060
At1g62740.1 68414.m07081 stress-inducible protein, putative simi... 34 0.079
At4g12400.1 68417.m01960 stress-inducible protein, putative simi... 34 0.10
At4g38790.1 68417.m05492 ER lumen protein retaining receptor fam... 31 0.73
At1g56440.1 68414.m06491 serine/threonine protein phosphatase-re... 31 0.73
At4g30480.2 68417.m04328 tetratricopeptide repeat (TPR)-containi... 31 0.97
At4g30480.1 68417.m04327 tetratricopeptide repeat (TPR)-containi... 31 0.97
At1g68185.1 68414.m07789 ubiquitin-related similar to ubiquitin-... 31 0.97
At5g09420.1 68418.m01091 chloroplast outer membrane translocon s... 30 1.7
At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containi... 28 5.2
At1g01740.1 68414.m00093 protein kinase family protein low simil... 28 5.2
At1g04190.1 68414.m00409 tetratricopeptide repeat (TPR)-containi... 28 6.8
>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
profile: PF00085 Thioredoxin
Length = 380
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/82 (41%), Positives = 43/82 (52%)
Frame = +2
Query: 263 ESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINL 442
ESDVELD V+ PD + Q MGDP AM A S+ ++DEAI
Sbjct: 76 ESDVELDNSDVVEPDN-EPPQPMGDPTAEVTDENRDDAQSEKSKAMEAISDGRFDEAIEH 134
Query: 443 YTAAIQLNPQSALLFAKRGQVY 508
T A+ LNP SA+L+A R V+
Sbjct: 135 LTKAVMLNPTSAILYATRASVF 156
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +3
Query: 39 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATFGAKDF 191
+A Q+ +L+ FVE K P +LH P L FFK+YL SLG +P +D+
Sbjct: 3 DAIQVAELRRFVEQLKLNPSILHDPSLVFFKEYLRSLGAQVPKIEKTERDY 53
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/38 (55%), Positives = 25/38 (65%)
Frame = +1
Query: 508 LKLNKPNACIKDCTHALELNCDSAXPYKFRGRAYRLLG 621
LK+ KPNA I+D AL+ N DSA YK RG A +LG
Sbjct: 157 LKVKKPNAAIRDANVALQFNSDSAKGYKSRGMAKAMLG 194
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 54.8 bits (126), Expect = 5e-08
Identities = 33/82 (40%), Positives = 41/82 (50%)
Frame = +2
Query: 263 ESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINL 442
ESDVEL+ + + PD D Q MGD + AM A SE +DEAI
Sbjct: 88 ESDVELEGD-TVEPDN-DPPQKMGDSSVEVTDENREAAQEAKGKAMEALSEGNFDEAIEH 145
Query: 443 YTAAIQLNPQSALLFAKRGQVY 508
T AI LNP SA+++ R VY
Sbjct: 146 LTRAITLNPTSAIMYGNRASVY 167
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +3
Query: 39 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPT 167
++ +L +LK F++ CK+ P LL P L+FF+DYL SLG +PT
Sbjct: 2 DSTKLSELKVFIDQCKSDPSLLTTPSLSFFRDYLESLGAKIPT 44
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/38 (57%), Positives = 26/38 (68%)
Frame = +1
Query: 508 LKLNKPNACIKDCTHALELNCDSAXPYKFRGRAYRLLG 621
+KL KPNA I+D ALE+N DSA YK RG A +LG
Sbjct: 168 IKLKKPNAAIRDANAALEINPDSAKGYKSRGMARAMLG 205
>At4g23570.2 68417.m03396 phosphatase-related low similarity to
phosphoprotein phosphatase [Mus musculus] GI:567040;
contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
domain, PF04969: CS domain
Length = 350
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 395 AMRAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
A AF + +D A++LY+ AI L+P A FA R Q Y
Sbjct: 9 AKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQAY 46
>At4g23570.1 68417.m03395 phosphatase-related low similarity to
phosphoprotein phosphatase [Mus musculus] GI:567040;
contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
domain, PF04969: CS domain
Length = 350
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 395 AMRAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
A AF + +D A++LY+ AI L+P A FA R Q Y
Sbjct: 9 AKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQAY 46
>At2g42810.1 68415.m05300 serine/threonine protein phosphatase,
putative similar to SP|P53042 Serine/threonine protein
phosphatase 5 (EC 3.1.3.16) (PP5) (Protein phosphatase
T) (PPT) {Rattus norvegicus}; contains Pfam profiles
PF00149: Ser/Thr protein phosphatase, PF00515: TPR
Domain
Length = 484
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 395 AMRAFSEQKYDEAINLYTAAIQLNPQSALLFAKR 496
A AF KY AI+LYT AI+LN +A+ +A R
Sbjct: 20 ANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANR 53
>At4g11260.1 68417.m01822 phosphatase-related low similarity to
protein phosphatase T [Saccharomyces cerevisiae]
GI:897806; contains Pfam profiles PF00515: TPR Domain,
PF05002: SGS domain, PF04969: CS domain
Length = 358
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 395 AMRAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQ 502
A AF + +D A++LY+ AI L+P A FA R Q
Sbjct: 9 AKEAFLDDDFDVAVDLYSKAIDLDPNCAAFFADRAQ 44
>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 572
Score = 34.7 bits (76), Expect = 0.060
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
F EQKY EAI YT AI+ NP ++ R Y
Sbjct: 394 FKEQKYPEAIKHYTEAIKRNPNDHKAYSNRAASY 427
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
AFS + AIN +T AI L P + +LF+ R +
Sbjct: 12 AFSSGDFTTAINHFTEAIALAPTNHVLFSNRSAAH 46
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 508 LKLNKPNACIKDCTHALELNCDSAXPYKFRGRA 606
L++ K N CI+DC A+E + YK RA
Sbjct: 289 LEMGKYNECIEDCNKAVERGRELRSDYKMVARA 321
>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 571
Score = 34.3 bits (75), Expect = 0.079
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
F EQKY +A+ YT AI+ NP+ ++ R Y
Sbjct: 393 FKEQKYPDAVRHYTEAIKRNPKDPRAYSNRAACY 426
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
AFS ++ A+N +T AI L P + +LF+ R +
Sbjct: 12 AFSSGDFNSAVNHFTDAINLTPTNHVLFSNRSAAH 46
>At4g12400.1 68417.m01960 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 530
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
F EQKY EA+ Y+ AI+ NP ++ R Y
Sbjct: 380 FKEQKYPEAVKHYSEAIKRNPNDVRAYSNRAACY 413
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
AFS Y AI +T AI L+P + +L++ R Y
Sbjct: 12 AFSSGDYATAITHFTEAINLSPTNHILYSNRSASY 46
>At4g38790.1 68417.m05492 ER lumen protein retaining receptor family
protein similar to SP|P35402 ER lumen protein retaining
receptor (HDEL receptor) {Arabidopsis thaliana};
contains Pfam profile PF00810: ER lumen protein
retaining receptor
Length = 273
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 682 WIIIVNPLKIHKRSWEDSSNYPRAYMLALGICKAXRCHSSTLRHV 548
W+I + K+ ED N+P Y+LA + A H ST ++
Sbjct: 117 WVIFMIRFKLRASYMEDKDNFPLYYVLAPCVALAVFIHPSTSHNI 161
>At1g56440.1 68414.m06491 serine/threonine protein
phosphatase-related similar to SP|Q60676
Serine/threonine protein phosphatase 5 (EC 3.1.3.16)
(PP5) (Protein phosphatase T) (PPT) Mus musculus,
Tetratricopeptide Repeats Of Protein Phosphatase 5 [Homo
sapiens] GI:3212250; contains Pfam profile: PF00515: TPR
Domain
Length = 476
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
F ++K++EAI+ Y+ +I L+P +A+ +A R Y
Sbjct: 95 FKQKKFNEAIDCYSRSIALSP-NAVTYANRAMAY 127
>At4g30480.2 68417.m04328 tetratricopeptide repeat (TPR)-containing
protein similar to SP|Q99614 Tetratricopeptide repeat
protein 1 {Homo sapiens}; contains Pfam profile PF00515:
TPR Domain
Length = 277
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 463 KSTECFVVC*TGTGV--LKLNKPNACIKDCTHALELN 567
+S E +C GV LKL K IK+CT ALELN
Sbjct: 140 ESIELRSICYLNRGVCFLKLGKCEETIKECTKALELN 176
>At4g30480.1 68417.m04327 tetratricopeptide repeat (TPR)-containing
protein similar to SP|Q99614 Tetratricopeptide repeat
protein 1 {Homo sapiens}; contains Pfam profile PF00515:
TPR Domain
Length = 208
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 463 KSTECFVVC*TGTGV--LKLNKPNACIKDCTHALELN 567
+S E +C GV LKL K IK+CT ALELN
Sbjct: 140 ESIELRSICYLNRGVCFLKLGKCEETIKECTKALELN 176
>At1g68185.1 68414.m07789 ubiquitin-related similar to
ubiquitin-like protein smt3/pmt3 SP:O13351 from [Fission
yeast]
Length = 215
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +2
Query: 254 KEPESDVELDMEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEA 433
+E E + ++E P +Q +P +R F+++K++
Sbjct: 108 QEVEESAKREVEESRNPSSETAAQLPSEPTNDRAKIVITIQDKDGQKTLRVFADEKFERV 167
Query: 434 INLYTAAIQLNPQS 475
I LYT +L+PQ+
Sbjct: 168 IKLYTDKAKLDPQN 181
>At5g09420.1 68418.m01091 chloroplast outer membrane translocon
subunit, putative similar to component of chloroplast
outer membrane translocon Toc64 [Pisum sativum]
GI:7453538; contains Pfam profiles PF01425: Amidase,
PF00515: TPR Domain
Length = 603
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
A+ +++++A+N YT AI+LN +A + R +
Sbjct: 498 AYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAF 532
>At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containing
protein glutamine-rich tetratricopeptide repeat (TPR)
containing protein (SGT) - Rattus
norvegicus,PID:e1285298 (SP|O70593); contains Pfam
profile PF00515 TPR Domain
Length = 426
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 401 RAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
+A Y EA+ LY+ AI L ++A+ + R Y
Sbjct: 184 KAMQSNLYLEAVELYSFAIALTDKNAVFYCNRAAAY 219
>At1g01740.1 68414.m00093 protein kinase family protein low
similarity to protein kinase [Arabidopsis thaliana]
GI:2852449; contains Pfam profile: PF00069 Protein
kinase domain
Length = 483
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 404 AFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
AF + + EAI YT + L SA + +R Q Y
Sbjct: 385 AFRRKDFSEAIEFYTQFLDLGMISATVLVRRSQSY 419
>At1g04190.1 68414.m00409 tetratricopeptide repeat (TPR)-containing
protein low similarity to protein antigen LmSTI1
[Leishmania major] GI:1698880; contains Pfam profile
PF00515 TPR Domain; EST gb|Z47802 and gb|Z48402 come
from this gene
Length = 328
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 407 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVY 508
F + +A LYT AI+L+P +A L++ R +
Sbjct: 26 FKAGNFLKAAALYTQAIKLDPSNATLYSNRAAAF 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,041,950
Number of Sequences: 28952
Number of extensions: 261253
Number of successful extensions: 628
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -