Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30729.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838... 77 7e-15
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 35 0.037
10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376 28 5.6
09_02_0249 + 6240237-6240287,6241489-6241764 28 5.6
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 27 7.5
01_01_0760 + 5860893-5861065,5861549-5862443 27 7.5
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 27 9.9
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 27 9.9
>02_03_0030 -
14083117-14083166,14083620-14083689,14083777-14083857,
14083940-14084065,14084916-14085143,14085246-14085325,
14086567-14086768,14086857-14086946
Length = 308
Score = 77.4 bits (182), Expect = 7e-15
Identities = 32/77 (41%), Positives = 52/77 (67%)
Frame = +3
Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXXAVREVQE 434
H+K + F+RP+S+N+ L R L P++ Y ++FSNV+ I+ LA+ DE V++VQE
Sbjct: 66 HLKAVYFLRPSSDNVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLADSDEQEVVQQVQE 125
Query: 435 VFADYLAVDRHLFSFNI 485
+AD+ A+D + F+ NI
Sbjct: 126 FYADFCAIDPYHFTLNI 142
Score = 57.2 bits (132), Expect = 8e-09
Identities = 26/57 (45%), Positives = 42/57 (73%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
M +I ++ YI +M PGMKV+++D +T +VS+VYSQS++L+KEV+L E +D+
Sbjct: 1 MTLITLIRDYIDRMLHDI-PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDN 56
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 35.1 bits (77), Expect = 0.037
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 258 MKCIVFIRPTSENIALLSREL--RDPKYGVYFIYFSNVVSKADIKTLAECDEXXA-VREV 428
M I FI+PT ENI + ++ + P Y +++FS+ V + + + + A + +
Sbjct: 472 MDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQRELVAQIKKDSNVRARIGAL 531
Query: 429 QEVFADYLAVDRHLFS 476
E+ +Y A+D F+
Sbjct: 532 SEMNLEYFAIDSQGFT 547
>10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376
Length = 418
Score = 27.9 bits (59), Expect = 5.6
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Frame = +3
Query: 285 TSENIALLSRELRDPKYGVYFIYFSN-----VVSKADIKTLAECDEXXAVREVQEVFADY 449
T ++ A+L R+ D +YG YFS +S D L E VRE+ + +D
Sbjct: 156 TLDSAAILFRDGFDEEYGNTINYFSKRKPPVPLSPPDPMELGFLRE--TVRELTSIMSDE 213
Query: 450 LAVDRHLFSFNIVGCLXGRVGTNSISNEF 536
+ L S L VG N +S F
Sbjct: 214 WLREAELSSEGTTSSLSPTVGANLVSESF 242
>09_02_0249 + 6240237-6240287,6241489-6241764
Length = 108
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 328 GSLSSRDNRAMFSDVGRIKTMHFMCSCYPIW 236
G+ +SR N A D+ R +T MC+ P W
Sbjct: 42 GTKNSRHNSATGMDLSRAQTSGSMCAAQPHW 72
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 536 KLVGDAVGSNPTXEASNNIEREQVSVHSQVVSKN--FLDLSD 417
+L+G+A+ +NP A IE + H+ S N +LD D
Sbjct: 226 QLIGEAINNNPAFLALRQIEAAREISHTMASSNNKVYLDSKD 267
>01_01_0760 + 5860893-5861065,5861549-5862443
Length = 355
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 388 LWPNVMKXXLSERSRKFLLTTWLWTDTCSLSILLDASXVGLEPTA 522
LW +M L E K L TTW + + S+ + A +P A
Sbjct: 175 LWSMLMAPVLREYPNKLLATTWQCVISAAQSLAVAAVAAARDPAA 219
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 536 KLVGDAVGSNPTXEASNNIE--REQVSVHSQVVSKNFLDLSD 417
+L+G A+ +NP A IE RE S +K FLD +D
Sbjct: 304 ELIGQAIANNPAFLALRQIEAAREISHTMSSSANKVFLDSND 345
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 536 KLVGDAVGSNPTXEASNNIEREQVSVHSQVVSKN--FLDLSD 417
+L+G+A+ +NP A IE + H+ S N +LD D
Sbjct: 363 QLIGEAINNNPAFLALRQIEAAREISHTMARSNNKVYLDSKD 404
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,400,929
Number of Sequences: 37544
Number of extensions: 239770
Number of successful extensions: 494
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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