Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30729.Seq
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7) 94 6e-20
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3) 30 1.4
SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9) 29 3.3
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2) 28 4.4
SB_6636| Best HMM Match : COX7C (HMM E-Value=1.8) 28 4.4
SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8) 27 7.6
SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25) 27 7.6
>SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7)
Length = 176
Score = 94.3 bits (224), Expect = 6e-20
Identities = 44/57 (77%), Positives = 50/57 (87%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNVI AVK Y+TKM SG GMKV+LMDKETT IVSMVYSQ+E+LQKEVYLFER+D+
Sbjct: 1 MNVILAVKQYVTKMIEESGAGMKVLLMDKETTGIVSMVYSQTEVLQKEVYLFERVDT 57
Score = 46.8 bits (106), Expect(2) = 5e-07
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +3
Query: 375 ADIKTLAECDEXXAVREVQEVFADYLAVDRHLFSFN 482
A I+ LAE D+ VREVQE +ADY A+ H+FS N
Sbjct: 77 ASIRALAEADDQEVVREVQEYYADYFAISPHVFSLN 112
Score = 24.2 bits (50), Expect(2) = 5e-07
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLS 311
+H+K I F+RPT +I L+
Sbjct: 64 KHLKAICFLRPTPASIRALA 83
>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
Length = 356
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -3
Query: 192 DFRLTVHHTHYAGSFFIH*YHFHSRAAXXXHFSNVHFNCLYHIHFD 55
D+ H+ +Y + + YH+H H+ + H++ YH H+D
Sbjct: 303 DYYYHYHYYYYYDYHYHYDYHYHYDYHYDYHY-DYHYHYDYHYHYD 347
>SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 524
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 164 TMLVVSLSINITFIPGPLSXXILVMYIL--TACITFILIKLSLFIS 33
T + SLS ++TF+ GPL+ + Y + A + IL L LF S
Sbjct: 57 TAWIASLSFSLTFMLGPLTTSLCTKYGVRSVAVLGAILFALGLFCS 102
>SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)
Length = 341
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -2
Query: 334 YLGSLSSRDNRAM---FSDVGRIKTMHFMCSCYPIWHDCLSSRISKLPSVRFPID 179
YL SL R + ++ + + GR+ T+ +P + D ++ IS++P V P+D
Sbjct: 207 YLRSLRKRQDMSVNTTWPNFGRVTTLVAQDMTFPSYDDVINDVISRVPFVDPPLD 261
>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
Length = 238
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -3
Query: 180 TVHHTHYAGSFFIH*YHFHSRAAXXXHFSNVHFNCLY--HIHFD*IILI 40
++HH + +F H Y++H + H + H + Y H H D I+I
Sbjct: 79 SIHHRYR--DYFYHSYNYHHKWQHYHHHHHYHHHLDYDHHYHHDLFIII 125
>SB_6636| Best HMM Match : COX7C (HMM E-Value=1.8)
Length = 237
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 436 FLLTTWLWTDTCSLSILLDASXVGLEPTASPTS 534
F L WLWT T SL+ D VG + A +S
Sbjct: 15 FALYLWLWTSTASLTEAKDNLRVGCDTKAYRSS 47
>SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/77 (18%), Positives = 34/77 (44%)
Frame = +1
Query: 25 ILCEINKDNLIKMNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKE 204
++CE+ KD+ K + V + + K G ++ TT + + ++E+++
Sbjct: 15 LICELGKDDFKKTGLPMCVAIKLQKAIESLDKGKELKTSLDSTTIKANKILKKTELIELS 74
Query: 205 VYLFERIDSHAKWDNMN 255
E +++ W+ N
Sbjct: 75 KKSLEAQFANSNWNEFN 91
>SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)
Length = 581
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 141 H*YHFHSRAAXXXHFSNVHFNCLYHIHFD*IILI 40
H YH H H+ +VH++ +H + D +I+I
Sbjct: 231 HHYHHHLCHDRRHHYHHVHYDHHHHHYHDIVIII 264
>SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25)
Length = 455
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -1
Query: 458 HSQVVSKNFLDLSDSXXFITFGQSFDVCLRNYITEIYKVNTIFRISQFP 312
+ Q++ +LS+ + T D CL NY+ +I K N ++++ FP
Sbjct: 105 YDQLIVTGDFNLSE-IDWTTGAAKTDDCLTNYLCKIIKDNYLWQLIDFP 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,998,293
Number of Sequences: 59808
Number of extensions: 299764
Number of successful extensions: 652
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -