Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30729.Seq
(548 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U35246-1|AAC50931.1| 570|Homo sapiens vacuolar protein sorting ... 120 4e-27
BC028382-1|AAH28382.1| 570|Homo sapiens vacuolar protein sortin... 118 1e-26
BC012932-1|AAH12932.1| 570|Homo sapiens vacuolar protein sortin... 118 1e-26
AL358073-4|CAI14265.1| 570|Homo sapiens vacuolar protein sortin... 118 1e-26
AK223214-1|BAD96934.1| 570|Homo sapiens vacuolar protein sortin... 118 1e-26
AK023170-1|BAB14443.1| 570|Homo sapiens protein ( Homo sapiens ... 118 1e-26
AJ133421-1|CAB40417.1| 570|Homo sapiens vacuolar protein sortin... 118 1e-26
AF165513-1|AAF86643.1| 570|Homo sapiens vacuolar protein sortin... 118 1e-26
AL358073-5|CAI14266.1| 316|Homo sapiens vacuolar protein sortin... 97 3e-20
BC017734-1|AAH17734.1| 642|Homo sapiens sec1 family domain cont... 42 0.001
AK222820-1|BAD96540.1| 642|Homo sapiens vesicle transport-relat... 42 0.001
AF110646-1|AAD48586.1| 638|Homo sapiens vesicle transport-relat... 42 0.001
AF086916-1|AAP97146.1| 617|Homo sapiens sly1p protein. 42 0.001
AB020724-1|BAA74940.2| 648|Homo sapiens KIAA0917 protein protein. 42 0.001
>U35246-1|AAC50931.1| 570|Homo sapiens vacuolar protein sorting
homolog h-vps45 protein.
Length = 570
Score = 120 bits (288), Expect = 4e-27
Identities = 52/85 (61%), Positives = 66/85 (77%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXXAVREVQ 431
+H+K I F+RPT EN+ L +ELR PKY +YFIYFSNV+SK+D+K+LAE DE V EVQ
Sbjct: 64 KHLKAICFLRPTKENVDSLIQELRRPKYSIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 EVFADYLAVDRHLFSFNIVGCLXGR 506
E + DY+AV+ HLFS NI+GC GR
Sbjct: 124 EFYGDYIAVNPHLFSLNILGCCQGR 148
Score = 97.5 bits (232), Expect = 3e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
>BC028382-1|AAH28382.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 118 bits (285), Expect = 1e-26
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXXAVREVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE V EVQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 EVFADYLAVDRHLFSFNIVGCLXGR 506
E + DY+AV+ HLFS NI+GC GR
Sbjct: 124 EFYGDYIAVNPHLFSLNILGCCQGR 148
Score = 97.5 bits (232), Expect = 3e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
>BC012932-1|AAH12932.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 118 bits (285), Expect = 1e-26
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXXAVREVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE V EVQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 EVFADYLAVDRHLFSFNIVGCLXGR 506
E + DY+AV+ HLFS NI+GC GR
Sbjct: 124 EFYGDYIAVNPHLFSLNILGCCQGR 148
Score = 97.5 bits (232), Expect = 3e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
>AL358073-4|CAI14265.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 118 bits (285), Expect = 1e-26
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXXAVREVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE V EVQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 EVFADYLAVDRHLFSFNIVGCLXGR 506
E + DY+AV+ HLFS NI+GC GR
Sbjct: 124 EFYGDYIAVNPHLFSLNILGCCQGR 148
Score = 97.5 bits (232), Expect = 3e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
>AK223214-1|BAD96934.1| 570|Homo sapiens vacuolar protein sorting
45A variant protein.
Length = 570
Score = 118 bits (285), Expect = 1e-26
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXXAVREVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE V EVQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 EVFADYLAVDRHLFSFNIVGCLXGR 506
E + DY+AV+ HLFS NI+GC GR
Sbjct: 124 EFYGDYIAVNPHLFSLNILGCCQGR 148
Score = 97.5 bits (232), Expect = 3e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
>AK023170-1|BAB14443.1| 570|Homo sapiens protein ( Homo sapiens
cDNA FLJ13108 fis, clone NT2RP3002529, weakly similar to
VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS45. ).
Length = 570
Score = 118 bits (285), Expect = 1e-26
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXXAVREVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE V EVQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 EVFADYLAVDRHLFSFNIVGCLXGR 506
E + DY+AV+ HLFS NI+GC GR
Sbjct: 124 EFYGDYIAVNPHLFSLNILGCCQGR 148
Score = 97.5 bits (232), Expect = 3e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
>AJ133421-1|CAB40417.1| 570|Homo sapiens vacuolar protein sorting
protein.
Length = 570
Score = 118 bits (285), Expect = 1e-26
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXXAVREVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE V EVQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 EVFADYLAVDRHLFSFNIVGCLXGR 506
E + DY+AV+ HLFS NI+GC GR
Sbjct: 124 EFYGDYIAVNPHLFSLNILGCCQGR 148
Score = 97.5 bits (232), Expect = 3e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
>AF165513-1|AAF86643.1| 570|Homo sapiens vacuolar protein sorting
45 isoform protein.
Length = 570
Score = 118 bits (285), Expect = 1e-26
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXXAVREVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE V EVQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 EVFADYLAVDRHLFSFNIVGCLXGR 506
E + DY+AV+ HLFS NI+GC GR
Sbjct: 124 EFYGDYIAVNPHLFSLNILGCCQGR 148
Score = 97.5 bits (232), Expect = 3e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
>AL358073-5|CAI14266.1| 316|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 316
Score = 97.5 bits (232), Expect = 3e-20
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
MNV+ AVK YI+KM SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDS 57
Score = 86.6 bits (205), Expect = 5e-17
Identities = 37/62 (59%), Positives = 49/62 (79%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXXAVREVQ 431
+H+K I F+RPT EN+ + +ELR PKY +YFIYFSNV+SK+D+K+LAE DE V EVQ
Sbjct: 64 KHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQ 123
Query: 432 EV 437
+V
Sbjct: 124 QV 125
>BC017734-1|AAH17734.1| 642|Homo sapiens sec1 family domain
containing 1 protein.
Length = 642
Score = 42.3 bits (95), Expect = 0.001
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECD-EXXAVREVQEVFA 443
+ F+ PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV +V +VF
Sbjct: 89 VYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFD 148
Query: 444 DYL 452
YL
Sbjct: 149 QYL 151
>AK222820-1|BAD96540.1| 642|Homo sapiens vesicle transport-related
protein isoform a variant protein.
Length = 642
Score = 42.3 bits (95), Expect = 0.001
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECD-EXXAVREVQEVFA 443
+ F+ PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV +V +VF
Sbjct: 89 VYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFD 148
Query: 444 DYL 452
YL
Sbjct: 149 QYL 151
>AF110646-1|AAD48586.1| 638|Homo sapiens vesicle transport-related
protein protein.
Length = 638
Score = 42.3 bits (95), Expect = 0.001
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECD-EXXAVREVQEVFA 443
+ F+ PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV +V +VF
Sbjct: 86 VYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFD 145
Query: 444 DYL 452
YL
Sbjct: 146 QYL 148
>AF086916-1|AAP97146.1| 617|Homo sapiens sly1p protein.
Length = 617
Score = 42.3 bits (95), Expect = 0.001
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECD-EXXAVREVQEVFA 443
+ F+ PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV +V +VF
Sbjct: 64 VYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFD 123
Query: 444 DYL 452
YL
Sbjct: 124 QYL 126
>AB020724-1|BAA74940.2| 648|Homo sapiens KIAA0917 protein protein.
Length = 648
Score = 42.3 bits (95), Expect = 0.001
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECD-EXXAVREVQEVFA 443
+ F+ PT ENI + ++LR+ Y Y++ F + +S++ ++ +A AV +V +VF
Sbjct: 95 VYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFD 154
Query: 444 DYL 452
YL
Sbjct: 155 QYL 157
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,916,736
Number of Sequences: 237096
Number of extensions: 1436575
Number of successful extensions: 2139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2139
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -