Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30729.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical pr...    91   6e-19
U41030-5|AAM51527.1|  132|Caenorhabditis elegans Hypothetical pr...    69   3e-12
Z77134-1|CAB00871.1|  293|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine rece...    29   2.9  

>U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical
           protein C44C1.4a protein.
          Length = 547

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 36/78 (46%), Positives = 59/78 (75%)
 Frame = +3

Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXXAVREVQ 431
           +++KC+VF+RPT +NI  L +EL++P++  Y++YF+N ++K D+K LAE D+   VREVQ
Sbjct: 65  KNLKCVVFVRPTPKNIERLVKELQEPRFSQYYLYFTNTINKYDVKRLAEADKNETVREVQ 124

Query: 432 EVFADYLAVDRHLFSFNI 485
           EVF D + + + LF+ N+
Sbjct: 125 EVFLDGVPIRKDLFTLNL 142



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 27/64 (42%), Positives = 45/64 (70%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
           M+++Q+ +  I  M   +G  MK++LMD ETT  VS  ++QSE++QKEVY+F+RI++   
Sbjct: 1   MDLVQSSRKLIQDMIQLAGSQMKLLLMDGETTPTVSCAFAQSEVMQKEVYIFDRIENKTS 60

Query: 241 WDNM 252
            +N+
Sbjct: 61  SENI 64


>U41030-5|AAM51527.1|  132|Caenorhabditis elegans Hypothetical
           protein C44C1.4b protein.
          Length = 132

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 25/59 (42%), Positives = 45/59 (76%)
 Frame = +3

Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSKADIKTLAECDEXXAVREV 428
           +++KC+VF+RPT +NI  L +EL++P++  Y++YF+N ++K D+K LAE D+   + +V
Sbjct: 65  KNLKCVVFVRPTPKNIERLVKELQEPRFSQYYLYFTNTINKYDVKRLAEADKNETIPKV 123



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 27/64 (42%), Positives = 45/64 (70%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
           M+++Q+ +  I  M   +G  MK++LMD ETT  VS  ++QSE++QKEVY+F+RI++   
Sbjct: 1   MDLVQSSRKLIQDMIQLAGSQMKLLLMDGETTPTVSCAFAQSEVMQKEVYIFDRIENKTS 60

Query: 241 WDNM 252
            +N+
Sbjct: 61  SENI 64


>Z77134-1|CAB00871.1|  293|Caenorhabditis elegans Hypothetical
           protein R09H10.2 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -2

Query: 388 VLMSALETTLLKYIK*TPYLGSLSSRDN-RAMFSDVGRIKTMHFMCSCYPIWHDCLSSRI 212
           V  +AL  +LL YI       S+S+    R  FSD    K      S Y  WHDCL   I
Sbjct: 8   VFFAALSISLLLYI-------SVSNTPTPRFNFSDSAVSKVW----SNYTAWHDCLMQNI 56

Query: 211 SKL 203
           SKL
Sbjct: 57  SKL 59


>U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 25 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 340 TPYLGSLSSRDNRAMFSDVGRIKTMHFMCSCYPIWH 233
           TPYL   +      +FS +  +    F C  YPIWH
Sbjct: 108 TPYLFGFNYFQFAKIFS-ISLLSANRFTCVAYPIWH 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,174,579
Number of Sequences: 27780
Number of extensions: 234416
Number of successful extensions: 483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)