Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30729.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   6.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.2  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 433 KFLLTTWLWTDTCSLSILLDASXVGLEPTASPTSFSR 543
           +FL+T        S  ++ +   + +EP  SP +F R
Sbjct: 177 QFLITNTSGPGVVSNPMIAELETLSVEPKVSPMTFCR 213


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 433 KFLLTTWLWTDTCSLSILLDASXVGLEPTASPTSFSR 543
           +FL+T        S  ++ +   + +EP  SP +F R
Sbjct: 177 QFLITNTSGPGVVSNPMIAELETLSVEPKVSPMTFCR 213


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 503 TXEASNNIEREQVSVHSQVVSKNFLDLSD 417
           T   +NNI  E VS    V  K+ LD+ D
Sbjct: 281 TESKTNNIVVEGVSFGQSVGLKDDLDIDD 309


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 176 YTILTMLVVSLSINIT 129
           Y + TM++V+LSI IT
Sbjct: 315 YLLFTMILVTLSIWIT 330


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 143 SINITFIPGPLSXXILVMYILTACITFIL 57
           SI +   PG L   +L M+IL   ++ ++
Sbjct: 92  SITLISFPGELLMRLLKMFILPLIVSSLI 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,310
Number of Sequences: 438
Number of extensions: 2999
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)