Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30728.Seq
(698 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9V3G1 Cluster: 60S ribosomal protein L8; n=71; Eukaryo... 155 7e-37
UniRef50_P62917 Cluster: 60S ribosomal protein L8; n=122; cellul... 140 2e-32
UniRef50_Q06B43 Cluster: Ribosomal protein; n=7; Coelomata|Rep: ... 134 3e-30
UniRef50_Q41960 Cluster: 60S ribosomal protein KD4/L2; n=3; Euka... 121 1e-26
UniRef50_Q5BZD1 Cluster: SJCHGC07017 protein; n=1; Schistosoma j... 110 4e-23
UniRef50_Q3T1K8 Cluster: Rpl8 protein; n=8; Coelomata|Rep: Rpl8 ... 79 8e-14
UniRef50_Q8ZYF5 Cluster: 50S ribosomal protein L2P; n=6; Thermop... 74 4e-12
UniRef50_UPI00015BAE9D Cluster: LSU ribosomal protein L2P; n=1; ... 71 4e-11
UniRef50_Q3LWH0 Cluster: Ribosomal protein L8; n=1; Bigelowiella... 71 4e-11
UniRef50_Q975I4 Cluster: 50S ribosomal protein L2P; n=10; Archae... 70 6e-11
UniRef50_O15574 Cluster: 60S ribosomal protein L8; n=1; Entamoeb... 69 8e-11
UniRef50_Q9YFN1 Cluster: 50S ribosomal protein L2P; n=3; Archaea... 67 4e-10
UniRef50_Q8TRU4 Cluster: 50S ribosomal protein L2P; n=12; Archae... 65 2e-09
UniRef50_A7DQR3 Cluster: Ribosomal protein L2; n=1; Candidatus N... 54 4e-06
UniRef50_Q8SSM6 Cluster: 60S ribosomal protein L8; n=1; Encephal... 54 4e-06
UniRef50_Q8TY93 Cluster: 50S ribosomal protein L2P; n=17; Euryar... 50 5e-05
UniRef50_P60408 Cluster: 50S ribosomal protein L2P; n=1; Nanoarc... 47 5e-04
UniRef50_A5C022 Cluster: Putative uncharacterized protein; n=1; ... 44 0.004
UniRef50_A7R935 Cluster: Chromosome undetermined scaffold_3264, ... 43 0.008
UniRef50_Q97BX4 Cluster: 50S ribosomal protein L2P; n=4; Thermop... 43 0.008
UniRef50_A0RZ09 Cluster: Ribosomal protein L2; n=2; Crenarchaeot... 41 0.025
UniRef50_Q9AIG2 Cluster: Ribosomal protein L2; n=4; Bacteria|Rep... 36 0.72
UniRef50_Q88XY3 Cluster: 50S ribosomal protein L2; n=90; Bacteri... 36 1.3
UniRef50_Q8YHN7 Cluster: 50S ribosomal protein L2; n=133; cellul... 34 3.9
UniRef50_A5AS87 Cluster: Putative uncharacterized protein; n=1; ... 33 6.7
UniRef50_Q7YN79 Cluster: Ribosomal protein L2; n=1; Eimeria tene... 33 6.7
UniRef50_A5YSU4 Cluster: Pterin-4a-carbinolamine dehydratase; n=... 33 8.9
>UniRef50_Q9V3G1 Cluster: 60S ribosomal protein L8; n=71;
Eukaryota|Rep: 60S ribosomal protein L8 - Drosophila
melanogaster (Fruit fly)
Length = 256
Score = 155 bits (377), Expect = 7e-37
Identities = 71/83 (85%), Positives = 77/83 (92%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
MGRVIRAQRKGAGSVF +H KKRKGA KLRSLD+AER GYI+GVVKDIIHDPGRGAPLAV
Sbjct: 1 MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60
Query: 192 VHFRDPYKFKTRKELFIAPEXLH 260
VHFRDPY++K RKELFIAPE +H
Sbjct: 61 VHFRDPYRYKIRKELFIAPEGMH 83
Score = 131 bits (316), Expect = 2e-29
Identities = 74/140 (52%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDW 423
+TGQFVYCG+KATL++GNVMP+ MPEGTI+CNLEEK DR SG + H
Sbjct: 83 HTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQD 142
Query: 424 TQS*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPI 603
T+ S A + + + M G IVAGGGRIDKPILKAGR YHKYKVKRN WP
Sbjct: 143 TKKTRVKLPSGA---KKVVPSANRAMVG-IVAGGGRIDKPILKAGRAYHKYKVKRNSWPK 198
Query: 604 CXXCCPXTL*SXLHGGGNHQ 663
+ HGGGNHQ
Sbjct: 199 VRGVAMNPV-EHPHGGGNHQ 217
>UniRef50_P62917 Cluster: 60S ribosomal protein L8; n=122; cellular
organisms|Rep: 60S ribosomal protein L8 - Homo sapiens
(Human)
Length = 257
Score = 140 bits (340), Expect = 2e-32
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 192 VHFRDPYKFKTRKELFIAPEXLH 260
V FRDPY+FK R ELFIA E +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 122 bits (294), Expect = 8e-27
Identities = 69/140 (49%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDW 423
+TGQFVYCGKKA L +GNV+PVG MPEGTIVC LEEK DR SG + H
Sbjct: 83 HTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142
Query: 424 TQS*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPI 603
T+ + K ++ + + +VAGGGRIDKPILKAGR YHKYK KRN WP
Sbjct: 143 TKK----TRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 198
Query: 604 CXXCCPXTL*SXLHGGGNHQ 663
+ GGGNHQ
Sbjct: 199 VRGVAMNPV-EHPFGGGNHQ 217
>UniRef50_Q06B43 Cluster: Ribosomal protein; n=7; Coelomata|Rep:
Ribosomal protein - Codakia orbicularis
Length = 234
Score = 134 bits (323), Expect = 3e-30
Identities = 60/83 (72%), Positives = 70/83 (84%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
MGRVIR+QRKG GSVF +HTK RKG LR++D+AERHGY+KGVVKDI+HDPGRGAPLA
Sbjct: 1 MGRVIRSQRKGPGSVFKAHTKHRKGKAALRAVDFAERHGYVKGVVKDIVHDPGRGAPLAK 60
Query: 192 VHFRDPYKFKTRKELFIAPEXLH 260
V FRDPYK+K R E FIA E ++
Sbjct: 61 VTFRDPYKYKMRTETFIATEGMY 83
Score = 73.7 bits (173), Expect = 4e-12
Identities = 41/90 (45%), Positives = 53/90 (58%)
Frame = +2
Query: 359 KRKXLIXRXLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRCMVVLLLEVDVLT 538
K I LARASGN+ATVI HNPD K++RVKLPSG+KKV+PS+NR +V ++ +
Sbjct: 93 KANLQIRGKLARASGNYATVISHNPDTKKSRVKLPSGSKKVIPSANRAIVGIVAGGGRID 152
Query: 539 NLF*KLEGATTSTRSNVTXGPYVRXVAHXP 628
K A ++ P VR VA P
Sbjct: 153 KPMLKAGRAYHKYKAKRNCWPKVRGVAMNP 182
Score = 71.3 bits (167), Expect = 2e-11
Identities = 33/51 (64%), Positives = 35/51 (68%)
Frame = +1
Query: 511 IVAGGGRIDKPILKAGRGYHKYKVKRNXWPICXXCCPXTL*SXLHGGGNHQ 663
IVAGGGRIDKP+LKAGR YHKYK KRN WP + HGGGNHQ
Sbjct: 144 IVAGGGRIDKPMLKAGRAYHKYKAKRNCWPKVRGVAMNPV-EHPHGGGNHQ 193
>UniRef50_Q41960 Cluster: 60S ribosomal protein KD4/L2; n=3;
Eukaryota|Rep: 60S ribosomal protein KD4/L2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 123
Score = 121 bits (292), Expect = 1e-26
Identities = 57/80 (71%), Positives = 65/80 (81%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
MGRVIRAQRK AGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKVAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 192 VHFRDPYKFKTRKELFIAPE 251
V FR P++FK +KELF+ E
Sbjct: 61 VTFRHPFRFKKQKELFVXXE 80
Score = 41.1 bits (92), Expect = 0.025
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +1
Query: 271 VYCGKKATLEVGNVMPVGAMPEG 339
+YCGKKATL VGNV+P+ ++PEG
Sbjct: 88 LYCGKKATLVVGNVLPLRSIPEG 110
>UniRef50_Q5BZD1 Cluster: SJCHGC07017 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC07017 protein - Schistosoma
japonicum (Blood fluke)
Length = 112
Score = 110 bits (264), Expect = 4e-23
Identities = 50/69 (72%), Positives = 58/69 (84%)
Frame = +3
Query: 24 IRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 203
IR+QRKGAG VF +HTK RKGA +LR +D+AERHGYI+GVVK+IIHDPGRGAPLA V FR
Sbjct: 1 IRSQRKGAGGVFKAHTKHRKGAARLRPVDFAERHGYIRGVVKEIIHDPGRGAPLAKVAFR 60
Query: 204 DPYKFKTRK 230
D Y +K K
Sbjct: 61 DVYSYKLIK 69
>UniRef50_Q3T1K8 Cluster: Rpl8 protein; n=8; Coelomata|Rep: Rpl8
protein - Rattus norvegicus (Rat)
Length = 47
Score = 79.4 bits (187), Expect = 8e-14
Identities = 35/46 (76%), Positives = 41/46 (89%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVK 149
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VK
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVK 46
>UniRef50_Q8ZYF5 Cluster: 50S ribosomal protein L2P; n=6;
Thermoproteales|Rep: 50S ribosomal protein L2P -
Pyrobaculum aerophilum
Length = 246
Score = 73.7 bits (173), Expect = 4e-12
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDRXXSGTCLWKLRHCDWTQS* 435
Y GQ V GK A+ + GN+M +G +PEGT++ N+E++ D K T +
Sbjct: 75 YVGQVVEIGKGASPKTGNIMILGEIPEGTMIFNVEKRAGDGG-------KFARAGGTYAV 127
Query: 436 C*AYK---SKATVWXQEGSAIKQQMHGR----IVAGGGRIDKPILKAGRGYHKYKVKRNX 594
K +K + G ++ GR IVAGGGRI+KP LKAG+ YH+ + K
Sbjct: 128 VIGQKPEENKTIIRLPSGRTVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWK 187
Query: 595 WPICXXCCPXTL*SXLHGGGNHQ 663
+P + HGGG+HQ
Sbjct: 188 YPTVRGKAMSPY-AHPHGGGSHQ 209
Score = 38.7 bits (86), Expect = 0.14
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 12 MGRVIRAQRKG-AGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 188
MG+ I QR+G GS F S + KR G + L GY V DI+H+PG AP+A
Sbjct: 1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPLGVISGKGY----VVDILHEPGLNAPVA 56
Query: 189 VV 194
+
Sbjct: 57 KI 58
Score = 38.7 bits (86), Expect = 0.14
Identities = 25/80 (31%), Positives = 35/80 (43%)
Frame = +2
Query: 389 ARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRCMVVLLLEVDVLTNLF*KLEGAT 568
ARA G +A VIG P+ +T ++LPSG + S R V ++ + F K
Sbjct: 119 ARAGGTYAVVIGQKPEENKTIIRLPSGRTVEVDSRGRATVGIVAGGGRIEKPFLKAGKKY 178
Query: 569 TSTRSNVTXGPYVRXVAHXP 628
R+ P VR A P
Sbjct: 179 HRARAKAWKYPTVRGKAMSP 198
>UniRef50_UPI00015BAE9D Cluster: LSU ribosomal protein L2P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L2P - Ignicoccus hospitalis KIN4/I
Length = 251
Score = 70.5 bits (165), Expect = 4e-11
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDRXXSGTCLWKLRHCDWTQS* 435
YTGQ V G A GN++P+ A+PEGT + N+E + D KL +
Sbjct: 79 YTGQKVQIGPNAAPVNGNILPLYAIPEGTQIFNVEIRPGDGG-------KLARSGGAYAI 131
Query: 436 C*AYKSKATVWXQEGSAIKQ-QMHGR----IVAGGGRIDKPILKAGRGYHKYKVKRNXWP 600
+ + +KQ R I AG GR +KP+LKAG Y+K+K K WP
Sbjct: 132 LVGKSGNSAIIQLPSGKVKQVNAKARATIGIAAGAGRDEKPLLKAGNAYYKWKAKAKKWP 191
Query: 601 ICXXCCPXTL*SXLHGGGNHQ 663
+ + + HGGGNHQ
Sbjct: 192 VVRGVAMNAV-NHPHGGGNHQ 211
>UniRef50_Q3LWH0 Cluster: Ribosomal protein L8; n=1; Bigelowiella
natans|Rep: Ribosomal protein L8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 281
Score = 70.5 bits (165), Expect = 4e-11
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Frame = +1
Query: 250 KXYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSD----RXXSGTCLWKLRHC 417
K Y + + CG +A GNV+P+ +P G VCN+EEK D +G + L H
Sbjct: 107 KLYLNKTIACGLQARPITGNVLPLFNIPNGVFVCNVEEKEGDGGKLARSAGAFVGVLSHS 166
Query: 418 DWTQS*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXW 597
+ SK S+ + G +VAGGG+ +KP+LKAG+ Y+K+K +
Sbjct: 167 KYNNVTKLKLPSKKIKIL---SSFCRATIG-VVAGGGKYEKPLLKAGKNYYKFKSLNKKY 222
Query: 598 PICXXCCPXTL*SXLHGGGNHQ 663
PI + HGGGNHQ
Sbjct: 223 PIVKIFYLGKE-NHPHGGGNHQ 243
Score = 45.6 bits (103), Expect = 0.001
Identities = 26/83 (31%), Positives = 40/83 (48%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
MG++I AQRKG + +R G +S+ E++ IKG++ D + P
Sbjct: 27 MGKIISAQRKGKIGFQKQGSSRRIGKISYKSMTNEEKYSVIKGIISKFHIDTVKKVPAIK 86
Query: 192 VHFRDPYKFKTRKELFIAPEXLH 260
+ F FK EL+IA E L+
Sbjct: 87 IKFNVTKYFKNYYELYIAVEKLY 109
>UniRef50_Q975I4 Cluster: 50S ribosomal protein L2P; n=10;
Archaea|Rep: 50S ribosomal protein L2P - Sulfolobus
tokodaii
Length = 238
Score = 69.7 bits (163), Expect = 6e-11
Identities = 46/134 (34%), Positives = 61/134 (45%)
Frame = +1
Query: 262 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDRXXSGTCLWKLRHCDWTQS*C* 441
GQ + GK A + GN++ VG +PEGTI+ N+E+ D
Sbjct: 76 GQKIQIGKNAAISNGNIVEVGNVPEGTIISNIEKTRGDGGKFARSAGTYGVVVGKTGDKV 135
Query: 442 AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPICXXCCP 621
K + Q S + + +VAGGG +KP+LKAG Y KYKVK WP
Sbjct: 136 LVKLSSEKIAQVSSNARAIVG--VVAGGGVTEKPLLKAGNNYWKYKVKAKKWPHVRGVAM 193
Query: 622 XTL*SXLHGGGNHQ 663
+ S HGGG HQ
Sbjct: 194 NAV-SHPHGGGLHQ 206
Score = 42.3 bits (95), Expect = 0.011
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSV-FVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 188
MG+ + QR G G + F S + +R G K+ +++ G G V DI+H+PG APLA
Sbjct: 1 MGKKLLQQRAGRGGINFRSPSWRRVGKAKIPNIE-----GEHIGKVIDIVHNPGTNAPLA 55
Query: 189 VVHFRDPYKF 218
++ D KF
Sbjct: 56 LIKLDDGTKF 65
>UniRef50_O15574 Cluster: 60S ribosomal protein L8; n=1; Entamoeba
histolytica|Rep: 60S ribosomal protein L8 - Entamoeba
histolytica
Length = 158
Score = 69.3 bits (162), Expect = 8e-11
Identities = 25/41 (60%), Positives = 34/41 (82%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR 378
Y+GQ++YCG KA+L +GNV+P+G PEGT+VCN+E K DR
Sbjct: 74 YSGQYIYCGSKASLHIGNVLPIGQCPEGTVVCNVESKPGDR 114
Score = 53.6 bits (123), Expect = 4e-06
Identities = 25/42 (59%), Positives = 31/42 (73%)
Frame = +3
Query: 135 KGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEXLH 260
+G+VK I HDPGRGAPLA V FR+P ++ KELFI E L+
Sbjct: 33 RGLVKSIEHDPGRGAPLARVVFRNPRQYGLDKELFICAEGLY 74
Score = 49.6 bits (113), Expect = 7e-05
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 386 LARASGNFATVIGHNPDAKRTRVKLPSGAK 475
+ARASGN+ATVI HN D + TR++LPSGAK
Sbjct: 117 IARASGNYATVISHNADNETTRIRLPSGAK 146
>UniRef50_Q9YFN1 Cluster: 50S ribosomal protein L2P; n=3;
Archaea|Rep: 50S ribosomal protein L2P - Aeropyrum
pernix
Length = 238
Score = 66.9 bits (156), Expect = 4e-10
Identities = 47/141 (33%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDRXXSGTCLWKLRHCDWTQS* 435
Y GQ + G A E GN++P+G +PEGT V N+E + D KL + +
Sbjct: 75 YVGQIIEIGPAAKPEAGNILPLGKIPEGTEVFNVELRPGDGG-------KLARQAGSYAL 127
Query: 436 C*AYKSKATVWXQEGSAIKQQMHGR-----IVAGGGRIDKPILKAGRGYHKYKVKRNXWP 600
T+ K+ + I AG GRI+KPI+KAG YHK+KVK WP
Sbjct: 128 VVGRAGAKTILRLPSGKDKEVPNDSRATIGIPAGAGRIEKPIMKAGFAYHKWKVKARKWP 187
Query: 601 ICXXCCPXTL*SXLHGGGNHQ 663
+ GGG HQ
Sbjct: 188 RVRGVAMNAV-DHPFGGGRHQ 207
Score = 35.9 bits (79), Expect = 0.96
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 12 MGRVIRAQRKGAGS-VFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 188
MG+ +R QR G G+ + S G K L ++G V ++IHDPGR PLA
Sbjct: 1 MGKRLRQQRAGRGTPTYRSRAHIHPGPAKYPPLS----GDTLRGKVVELIHDPGRYVPLA 56
Query: 189 VVHFRDPYKF 218
V D +F
Sbjct: 57 RVVREDGVEF 66
>UniRef50_Q8TRU4 Cluster: 50S ribosomal protein L2P; n=12;
Archaea|Rep: 50S ribosomal protein L2P - Methanosarcina
acetivorans
Length = 238
Score = 64.9 bits (151), Expect = 2e-09
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Frame = +1
Query: 262 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDWTQ 429
G + CG A ++ GN++P+G +PEG +CN+E K +D SG + H + T+
Sbjct: 78 GNIIECGDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTH-EATR 136
Query: 430 S*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWP 600
+ + S W K + IVAG GR+D+P LKAG+ YHK K + +P
Sbjct: 137 T-AVSMPSGNIKWLNP----KCRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYP 188
>UniRef50_A7DQR3 Cluster: Ribosomal protein L2; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L2
- Candidatus Nitrosopumilus maritimus SCM1
Length = 244
Score = 53.6 bits (123), Expect = 4e-06
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Frame = +1
Query: 262 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDWTQ 429
G+ + G K+ +E GNV+ + +P+GTIVCN+E+ D +GT H D
Sbjct: 79 GETLQFGLKSKIEKGNVISIQNIPDGTIVCNIEKHFGDGGAIVKSAGTDATVFSHGDEGV 138
Query: 430 S*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPICX 609
+ K T + A M G + AGGG ++P + AG + +K K +PI
Sbjct: 139 T-VKLPSGKFTTLNPKNRA----MIGTL-AGGGASERPFMSAGGKWRNFKAKGKKYPIVR 192
Query: 610 XCCPXTL*SXLHGGGNHQ 663
HGGG HQ
Sbjct: 193 GVAQAAY-VHPHGGGRHQ 209
Score = 33.1 bits (72), Expect = 6.7
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLR--SLDYAERHGYIKGVVKDIIHDPGRGAPL 185
MG+ +R+G G T K K +E+H +G + D++H+ GR APL
Sbjct: 1 MGKRPLVRRRGRGGNQFRSTSTGKVGTKANYPRFPLSEQH---EGEIIDLVHERGREAPL 57
Query: 186 AVVHFRD 206
A V F D
Sbjct: 58 AKVRFED 64
>UniRef50_Q8SSM6 Cluster: 60S ribosomal protein L8; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L8 -
Encephalitozoon cuniculi
Length = 239
Score = 53.6 bits (123), Expect = 4e-06
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSD----RXXSGTCLWKLRHCDW 423
YTGQ + G A +++GN+ + +PEG V ++E D +G+ + H
Sbjct: 69 YTGQKILIGDDAPIDIGNITKIKNVPEGMAVNSVESVYGDGGTFAMVNGSYSLVVNHRKE 128
Query: 424 TQS*C*AYKS--KATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXW 597
T S K TV S+ + + G +VAGGG DKP+LKA ++K K + + +
Sbjct: 129 TNETVIKIPSGKKLTV-----SSECRCIVG-VVAGGGIHDKPLLKASVAHYKAKARGHVF 182
Query: 598 PICXXCCPXTL*SXLHGGGNHQ 663
P + +HGGGNHQ
Sbjct: 183 PRVRGVAMNPV-EHIHGGGNHQ 203
Score = 38.3 bits (85), Expect = 0.18
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +2
Query: 389 ARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRCMVVLLLEVDVLTNLF*KLEGAT 568
A +G+++ V+ H + T +K+PSG K + S RC+V ++ + K A
Sbjct: 113 AMVNGSYSLVVNHRKETNETVIKIPSGKKLTVSSECRCIVGVVAGGGIHDKPLLKASVAH 172
Query: 569 TSTRSNVTXGPYVRXVAHXP 628
++ P VR VA P
Sbjct: 173 YKAKARGHVFPRVRGVAMNP 192
>UniRef50_Q8TY93 Cluster: 50S ribosomal protein L2P; n=17;
Euryarchaeota|Rep: 50S ribosomal protein L2P -
Methanopyrus kandleri
Length = 243
Score = 50.0 bits (114), Expect = 5e-05
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 3/137 (2%)
Frame = +1
Query: 262 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDRXXSGT---CLWKLRHCDWTQS 432
G + CG A ++ GN +P+ +PEG + N+E + D C + D ++
Sbjct: 81 GDIIECGVSAEIKPGNTLPLAEIPEGVPIFNIEGQPGDGGKFARAPGCYATIIAHDVGRT 140
Query: 433 *C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPICXX 612
K + A +++GGG+ +KP +KAG+ Y+ + K WP
Sbjct: 141 YVQLPSGKVRTFDPRCRATIG-----VMSGGGKREKPFVKAGKKYYHMRSKGGKWPKVRG 195
Query: 613 CCPXTL*SXLHGGGNHQ 663
+ GGGNHQ
Sbjct: 196 VAMNAV-DHPFGGGNHQ 211
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 12 MGRVIRAQRKGAGS-VFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 188
MG+ IR QR G G + + + + +G + R D E+ G + G V +++HDP R AP+A
Sbjct: 1 MGKRIRPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVA 60
Query: 189 VVHFRD 206
V F D
Sbjct: 61 RVRFED 66
Score = 32.7 bits (71), Expect = 8.9
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = +2
Query: 389 ARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRCMVVL 514
ARA G +AT+I H D RT V+LPSG KV RC +
Sbjct: 123 ARAPGCYATIIAH--DVGRTYVQLPSG--KVRTFDPRCRATI 160
>UniRef50_P60408 Cluster: 50S ribosomal protein L2P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L2P -
Nanoarchaeum equitans
Length = 238
Score = 46.8 bits (106), Expect = 5e-04
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Frame = +1
Query: 232 SSSLLPKXY---TGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDRXXSGTCLW 402
+ SLLP G VY GK+A +G++ P+ +PEGT + LE D G L
Sbjct: 65 AQSLLPAPLGISVGDTVYYGKEAPNAIGSIKPLSEIPEGTKIYMLENNPGD----GGKLV 120
Query: 403 KLRHCDWTQS*C*AYKSKATVWXQEGSAIKQQMHGR----IVAGGGRIDKPILKAGRGYH 570
+ D+ K V G + R ++AGGGR +KP +KAG Y+
Sbjct: 121 RASG-DFALL-VQKLGDKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYY 178
Query: 571 KYKVKRNXWPI 603
+ WP+
Sbjct: 179 WASSRNRHWPV 189
>UniRef50_A5C022 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 128
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEG 339
YTGQFV C KKATL V NV+P+ + PEG
Sbjct: 49 YTGQFVCCSKKATLIVDNVLPLRSTPEG 76
>UniRef50_A7R935 Cluster: Chromosome undetermined scaffold_3264,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_3264, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 66
Score = 42.7 bits (96), Expect = 0.008
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRK 83
MGRVIRAQRKG GS+F SHT RK
Sbjct: 1 MGRVIRAQRKGVGSIFKSHTHHRK 24
>UniRef50_Q97BX4 Cluster: 50S ribosomal protein L2P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L2P -
Thermoplasma volcanium
Length = 234
Score = 42.7 bits (96), Expect = 0.008
Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDRXXSGTCLWKLRHCDWTQS* 435
Y GQ + G T+ G + +P+G+ V N+E D + T +
Sbjct: 71 YVGQKIVAGNVDTINPGTTTVLANIPDGSYVYNIESSPGDGG-------EFCRSAGTFAL 123
Query: 436 C*AYKSKATVWXQEGSAIKQQMHGR----IVAGGGRIDKPILKAGRGYHKYKVKRNXWPI 603
++ S+ T+ GS R +VA G ID PILKAG H + K P
Sbjct: 124 VVSHGSRVTLKLPSGSMRDFDPRCRATVGVVAASGIIDAPILKAGTHVHYLRSKAKR-PY 182
Query: 604 CXXCCPXTL*SXLHGGGNHQ 663
+ HGGGNHQ
Sbjct: 183 TVRGVAMNAVNHPHGGGNHQ 202
Score = 33.1 bits (72), Expect = 6.7
Identities = 23/58 (39%), Positives = 31/58 (53%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 185
MG+ I QR+G GS+ V + + ++ L E VVKDIIH PGR +PL
Sbjct: 1 MGKHIIPQRRGHGSL-VYRSPSHRHVVDVKHLKPGEY------VVKDIIHAPGRNSPL 51
>UniRef50_A0RZ09 Cluster: Ribosomal protein L2; n=2;
Crenarchaeota|Rep: Ribosomal protein L2 - Cenarchaeum
symbiosum
Length = 243
Score = 41.1 bits (92), Expect = 0.025
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Frame = +1
Query: 262 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDRXXSGTCLWKLRHCDWTQS*C* 441
G + G K+ + GNV+ V +P+GT VCN+E+ D G + K + T
Sbjct: 78 GSSMNFGLKSEIRDGNVISVQNIPDGTTVCNVEKHYGD----GGAIVKSAGGNATVFSHG 133
Query: 442 AYKSKATVWXQEGSAIKQQMHGRI--VAGGGRIDKPILKAGRGYHKYKVKRNXWPICXXC 615
+ S + + + +AGGG ++P + AG + +++ K +PI
Sbjct: 134 EGGVVLKLPSGRFSTLNPKNRAMVGTLAGGGVSERPFMSAGGKWRRFRSKGRKYPIVRGV 193
Query: 616 CPXTL*SXLHGGGNHQ 663
HGGG HQ
Sbjct: 194 AQAAY-VHPHGGGRHQ 208
Score = 35.9 bits (79), Expect = 0.96
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSV-FVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 188
MG+ +R+G G + F + T + K + + E+ +G V D++H+ GR APLA
Sbjct: 1 MGKRPLVRRRGRGGMQFRAATTGKIARAKYPAFELGEQR---EGTVIDLVHERGRDAPLA 57
Query: 189 VVHFRD 206
+ F D
Sbjct: 58 KIRFED 63
>UniRef50_Q9AIG2 Cluster: Ribosomal protein L2; n=4; Bacteria|Rep:
Ribosomal protein L2 - Carsonella ruddii
Length = 235
Score = 36.3 bits (80), Expect = 0.72
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +3
Query: 39 KGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYK 215
+ G + V H K K R +D+ IKG+V+ I +DP R A +A++ + D K
Sbjct: 18 RSRGKISVRHIGK-KHKKFYRKIDFKRDKSNIKGIVESIHYDPNRNARIALIKYLDGEK 75
>UniRef50_Q88XY3 Cluster: 50S ribosomal protein L2; n=90;
Bacteria|Rep: 50S ribosomal protein L2 - Lactobacillus
plantarum
Length = 279
Score = 35.5 bits (78), Expect = 1.3
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 229 RSSSLLPKXY-TGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEK 366
+S L PK G V G +A ++VGN +P+ +P GT++ N+E K
Sbjct: 101 KSYILAPKGLEVGMQVQSGAEADIKVGNALPLTNIPVGTVIHNIELK 147
>UniRef50_Q8YHN7 Cluster: 50S ribosomal protein L2; n=133; cellular
organisms|Rep: 50S ribosomal protein L2 - Brucella
melitensis
Length = 277
Score = 33.9 bits (74), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 262 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 360
G V G ++ GN MP+ +MP GTI+ N+E
Sbjct: 113 GDQVVAGNSVDVKPGNAMPLSSMPVGTIIHNVE 145
>UniRef50_A5AS87 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 185
Score = 33.1 bits (72), Expect = 6.7
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -3
Query: 378 SIRXFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACV 256
++ + +AHNGTL S R +I+N + L+TI++L V
Sbjct: 8 TVTHMVLNVAHNGTLGDGSKRQYIANNEIGLLATIDELVGV 48
>UniRef50_Q7YN79 Cluster: Ribosomal protein L2; n=1; Eimeria
tenella|Rep: Ribosomal protein L2 - Eimeria tenella
Length = 273
Score = 33.1 bits (72), Expect = 6.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 262 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 360
G +Y G+ L++GN++P+ +P G+ + N+E
Sbjct: 109 GDIIYIGETIELKIGNILPIKKIPCGSWIHNIE 141
>UniRef50_A5YSU4 Cluster: Pterin-4a-carbinolamine dehydratase; n=2;
Halobacteriaceae|Rep: Pterin-4a-carbinolamine
dehydratase - uncultured haloarchaeon
Length = 115
Score = 32.7 bits (71), Expect = 8.9
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 108 DYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEXLHRP-ICLLWK 284
+YAE H ++G V +++ D A FRD +F T + +A E H P I L W
Sbjct: 24 EYAEYHTELRGDVWEVVDDHHLEATYNFEDFRDALEF-TYEIGELAEEEWHHPDISLEWG 82
Query: 285 ESNS*SW 305
E N W
Sbjct: 83 EVNIEMW 89
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,103,602
Number of Sequences: 1657284
Number of extensions: 12982962
Number of successful extensions: 29842
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 28985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29829
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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