Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30728.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   5.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.3  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   9.7  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   9.7  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   9.7  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -1

Query: 251 FGSNEELLPCLELVWIAEVYNSQRCT-STRVMDY 153
           FG+   L    +L+W  EV N  R      + DY
Sbjct: 180 FGARHGLETLNQLIWFDEVVNELRILHGVEIRDY 213


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +1

Query: 400  WKLRHCDWTQS 432
            W   HCDW ++
Sbjct: 2271 WNKDHCDWPEN 2281


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 480 TFLAPDGSFTLVR 442
           T   PDG FT++R
Sbjct: 579 TVTVPDGGFTIIR 591


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 211 TSSRQGRSSSLLPKXYT 261
           TSS  GRS + LP  +T
Sbjct: 28  TSSPAGRSPAFLPHHFT 44


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 211 TSSRQGRSSSLLPKXYT 261
           TSS  GRS + LP  +T
Sbjct: 28  TSSPAGRSPAFLPHHFT 44


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 211 TSSRQGRSSSLLPKXYT 261
           TSS  GRS + LP  +T
Sbjct: 28  TSSPAGRSPAFLPHHFT 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,436
Number of Sequences: 336
Number of extensions: 3305
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)