Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30728.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      127   7e-30
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    32   0.38 
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   2.7  
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443...    28   8.2  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  127 bits (307), Expect = 7e-30
 Identities = 58/83 (69%), Positives = 69/83 (83%)
 Frame = +3

Query: 12  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 192 VHFRDPYKFKTRKELFIAPEXLH 260
           V FR P+++K +KELF+A E ++
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMY 83



 Score =  107 bits (256), Expect = 1e-23
 Identities = 61/140 (43%), Positives = 78/140 (55%), Gaps = 4/140 (2%)
 Frame = +1

Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDW 423
           YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E    DR      SG     + H   
Sbjct: 83  YTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPD 142

Query: 424 TQS*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPI 603
             +      S A           + M G+ VAGGGR +KP+LKAG  YHKY+VKRN WP 
Sbjct: 143 NGTSRIKLPSGAKKIVPSSC---RAMIGQ-VAGGGRTEKPMLKAGNAYHKYRVKRNCWPK 198

Query: 604 CXXCCPXTL*SXLHGGGNHQ 663
                   +    HGGGNHQ
Sbjct: 199 VRGVAMNPV-EHPHGGGNHQ 217



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +2

Query: 389 ARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRCMV 508
           ARASG++A VI HNPD   +R+KLPSGAKK++PSS R M+
Sbjct: 127 ARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMI 166


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 519 WRWTY*QTYFESWKGLPQVQG 581
           W WTY  T+F SW  +P +QG
Sbjct: 70  WSWTYWSTFFLSWSIVPTLQG 90


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 397 LWKLRHCDWT 426
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>02_05_0812 +
           31942591-31942758,31943415-31943491,31944169-31944327,
           31944559-31944772,31944849-31944935,31945022-31945161,
           31945380-31945460,31945948-31946012,31946219-31946394,
           31947212-31947342,31947438-31947525,31947671-31947884,
           31948206-31948312,31948456-31948953
          Length = 734

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 519 WRWTY*QTYFESWKGLPQVQG 581
           W W+Y  T+  +W  +P +QG
Sbjct: 70  WSWSYWSTFILTWAVVPTIQG 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,955,302
Number of Sequences: 37544
Number of extensions: 378595
Number of successful extensions: 819
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)