Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30728.Seq
(698 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8 prot... 140 3e-33
CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein. 140 3e-33
BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8 pr... 140 3e-33
BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8 pr... 140 3e-33
BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8 pr... 140 3e-33
BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8 pr... 140 3e-33
BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8 pr... 140 3e-33
AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8 pr... 140 3e-33
AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8 pr... 132 9e-31
BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein. 122 1e-27
>Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 140 bits (340), Expect = 3e-33
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 192 VHFRDPYKFKTRKELFIAPEXLH 260
V FRDPY+FK R ELFIA E +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 122 bits (294), Expect = 1e-27
Identities = 69/140 (49%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDW 423
+TGQFVYCGKKA L +GNV+PVG MPEGTIVC LEEK DR SG + H
Sbjct: 83 HTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142
Query: 424 TQS*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPI 603
T+ + K ++ + + +VAGGGRIDKPILKAGR YHKYK KRN WP
Sbjct: 143 TKK----TRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 198
Query: 604 CXXCCPXTL*SXLHGGGNHQ 663
+ GGGNHQ
Sbjct: 199 VRGVAMNPV-EHPFGGGNHQ 217
>CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein.
Length = 257
Score = 140 bits (340), Expect = 3e-33
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 192 VHFRDPYKFKTRKELFIAPEXLH 260
V FRDPY+FK R ELFIA E +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 122 bits (294), Expect = 1e-27
Identities = 69/140 (49%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDW 423
+TGQFVYCGKKA L +GNV+PVG MPEGTIVC LEEK DR SG + H
Sbjct: 83 HTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142
Query: 424 TQS*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPI 603
T+ + K ++ + + +VAGGGRIDKPILKAGR YHKYK KRN WP
Sbjct: 143 TKK----TRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 198
Query: 604 CXXCCPXTL*SXLHGGGNHQ 663
+ GGGNHQ
Sbjct: 199 VRGVAMNPV-EHPFGGGNHQ 217
>BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 140 bits (340), Expect = 3e-33
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 192 VHFRDPYKFKTRKELFIAPEXLH 260
V FRDPY+FK R ELFIA E +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 122 bits (295), Expect = 9e-28
Identities = 70/140 (50%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDW 423
+TGQFVYCGKKA L VGNV+PVG MPEGTIVC LEEK DR SG + H
Sbjct: 83 HTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142
Query: 424 TQS*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPI 603
T+ + K ++ + + +VAGGGRIDKPILKAGR YHKYK KRN WP
Sbjct: 143 TKK----TRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 198
Query: 604 CXXCCPXTL*SXLHGGGNHQ 663
+ GGGNHQ
Sbjct: 199 VRGVAMNPV-EHPFGGGNHQ 217
>BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 140 bits (340), Expect = 3e-33
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 192 VHFRDPYKFKTRKELFIAPEXLH 260
V FRDPY+FK R ELFIA E +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 122 bits (294), Expect = 1e-27
Identities = 69/140 (49%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDW 423
+TGQFVYCGKKA L +GNV+PVG MPEGTIVC LEEK DR SG + H
Sbjct: 83 HTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142
Query: 424 TQS*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPI 603
T+ + K ++ + + +VAGGGRIDKPILKAGR YHKYK KRN WP
Sbjct: 143 TKK----TRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 198
Query: 604 CXXCCPXTL*SXLHGGGNHQ 663
+ GGGNHQ
Sbjct: 199 VRGVAMNPV-EHPFGGGNHQ 217
>BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 140 bits (340), Expect = 3e-33
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 192 VHFRDPYKFKTRKELFIAPEXLH 260
V FRDPY+FK R ELFIA E +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 122 bits (295), Expect = 9e-28
Identities = 70/140 (50%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDW 423
+TGQFVYCGKKA L VGNV+PVG MPEGTIVC LEEK DR SG + H
Sbjct: 83 HTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142
Query: 424 TQS*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPI 603
T+ + K ++ + + +VAGGGRIDKPILKAGR YHKYK KRN WP
Sbjct: 143 TKK----TRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 198
Query: 604 CXXCCPXTL*SXLHGGGNHQ 663
+ GGGNHQ
Sbjct: 199 VRGVAMNPV-EHPFGGGNHQ 217
>BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 140 bits (340), Expect = 3e-33
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 192 VHFRDPYKFKTRKELFIAPEXLH 260
V FRDPY+FK R ELFIA E +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 122 bits (295), Expect = 9e-28
Identities = 70/140 (50%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDW 423
+TGQFVYCGKKA L VGNV+PVG MPEGTIVC LEEK DR SG + H
Sbjct: 83 HTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142
Query: 424 TQS*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPI 603
T+ + K ++ + + +VAGGGRIDKPILKAGR YHKYK KRN WP
Sbjct: 143 TKK----TRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 198
Query: 604 CXXCCPXTL*SXLHGGGNHQ 663
+ GGGNHQ
Sbjct: 199 VRGVAMNPV-EHPFGGGNHQ 217
>BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 140 bits (340), Expect = 3e-33
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 192 VHFRDPYKFKTRKELFIAPEXLH 260
V FRDPY+FK R ELFIA E +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 122 bits (294), Expect = 1e-27
Identities = 69/140 (49%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDW 423
+TGQFVYCGKKA L +GNV+PVG MPEGTIVC LEEK DR SG + H
Sbjct: 83 HTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142
Query: 424 TQS*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPI 603
T+ + K ++ + + +VAGGGRIDKPILKAGR YHKYK KRN WP
Sbjct: 143 TKK----TRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 198
Query: 604 CXXCCPXTL*SXLHGGGNHQ 663
+ GGGNHQ
Sbjct: 199 VRGVAMNPV-EHPFGGGNHQ 217
>AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 140 bits (340), Expect = 3e-33
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +3
Query: 12 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 191
MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA
Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 192 VHFRDPYKFKTRKELFIAPEXLH 260
V FRDPY+FK R ELFIA E +H
Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIH 83
Score = 122 bits (294), Expect = 1e-27
Identities = 69/140 (49%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDW 423
+TGQFVYCGKKA L +GNV+PVG MPEGTIVC LEEK DR SG + H
Sbjct: 83 HTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142
Query: 424 TQS*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPI 603
T+ + K ++ + + +VAGGGRIDKPILKAGR YHKYK KRN WP
Sbjct: 143 TKK----TRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 198
Query: 604 CXXCCPXTL*SXLHGGGNHQ 663
+ GGGNHQ
Sbjct: 199 VRGVAMNPV-EHPFGGGNHQ 217
>AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8
protein.
Length = 130
Score = 132 bits (320), Expect = 9e-31
Identities = 60/79 (75%), Positives = 68/79 (86%)
Frame = +3
Query: 24 IRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 203
IR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FR
Sbjct: 1 IRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFR 60
Query: 204 DPYKFKTRKELFIAPEXLH 260
DPY+FK R ELFIA E +H
Sbjct: 61 DPYRFKKRTELFIAAEGIH 79
Score = 74.9 bits (176), Expect = 2e-13
Identities = 32/41 (78%), Positives = 35/41 (85%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR 378
+TGQFVYCGKKA L +GNV+PVG MPEGTIVC LEEK DR
Sbjct: 79 HTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDR 119
>BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein.
Length = 211
Score = 122 bits (294), Expect = 1e-27
Identities = 69/140 (49%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Frame = +1
Query: 256 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKXSDR----XXSGTCLWKLRHCDW 423
+TGQFVYCGKKA L +GNV+PVG MPEGTIVC LEEK DR SG + H
Sbjct: 37 HTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 96
Query: 424 TQS*C*AYKSKATVWXQEGSAIKQQMHGRIVAGGGRIDKPILKAGRGYHKYKVKRNXWPI 603
T+ + K ++ + + +VAGGGRIDKPILKAGR YHKYK KRN WP
Sbjct: 97 TKK----TRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPR 152
Query: 604 CXXCCPXTL*SXLHGGGNHQ 663
+ GGGNHQ
Sbjct: 153 VRGVAMNPV-EHPFGGGNHQ 171
Score = 65.7 bits (153), Expect = 2e-10
Identities = 29/37 (78%), Positives = 31/37 (83%)
Frame = +3
Query: 150 DIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEXLH 260
DIIHDPGRGAPLA V FRDPY+FK R ELFIA E +H
Sbjct: 1 DIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIH 37
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,236,470
Number of Sequences: 237096
Number of extensions: 2084970
Number of successful extensions: 3529
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3511
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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